Difference between revisions of "SJ04004"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] == * common-name: ** homogentisate * smiles: ** c1(c(=cc(=c(c=1)o)...")
(Created page with "Category:gene == Gene SJ04004 == * transcription-direction: ** negative * right-end-position: ** 388870 * left-end-position: ** 359555 * centisome-position: ** 69.34322...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=HOMOGENTISATE HOMOGENTISATE] ==
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== Gene SJ04004 ==
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* common-name:
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* transcription-direction:
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** homogentisate
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** negative
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* smiles:
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* right-end-position:
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** c1(c(=cc(=c(c=1)o)cc([o-])=o)o)
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** 388870
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* inchi-key:
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* left-end-position:
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** igmnyecmumzddf-uhfffaoysa-m
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** 359555
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* molecular-weight:
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* centisome-position:
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** 167.141
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** 69.34322   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-14929]]
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-2541]]
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== Reaction(s) associated ==
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* [[RXN-2761]]
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* [[PEPCARBOX-RXN]]
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== Reaction(s) known to produce the compound ==
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** Category: [[annotation]]
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* [[4-HYDROXYPHENYLPYRUVATE-DIOXYGENASE-RXN]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[HPPD]]
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** Category: [[orthology]]
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== Reaction(s) of unknown directionality ==
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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{{#set: common-name=homogentisate}}
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* [[PPC]]
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{{#set: inchi-key=inchikey=igmnyecmumzddf-uhfffaoysa-m}}
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** Category: [[orthology]]
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{{#set: molecular-weight=167.141}}
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-241]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5913]]
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** '''10''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6142]]
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** '''10''' reactions found over '''13''' reactions in the full pathway
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* [[P23-PWY]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[PWYQT-4429]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6146]]
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** '''9''' reactions found over '''2''' reactions in the full pathway
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* [[FERMENTATION-PWY]]
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** '''11''' reactions found over '''16''' reactions in the full pathway
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* [[PWY-7124]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6549]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-1622]]
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** '''6''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7117]]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7115]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=388870}}
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{{#set: left-end-position=359555}}
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{{#set: centisome-position=69.34322    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=2}}
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{{#set: nb pathway associated=12}}

Latest revision as of 11:03, 18 March 2021

Gene SJ04004

  • transcription-direction:
    • negative
  • right-end-position:
    • 388870
  • left-end-position:
    • 359555
  • centisome-position:
    • 69.34322

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-241
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6146
    • 9 reactions found over 2 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04004&oldid=132937"