Difference between revisions of "SJ04039"
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(Created page with "Category:gene == Gene SJ08696 == * transcription-direction: ** negative * right-end-position: ** 165121 * left-end-position: ** 162688 * centisome-position: ** 37.463875...") |
(Created page with "Category:gene == Gene SJ12148 == * transcription-direction: ** positive * right-end-position: ** 113423 * left-end-position: ** 106581 * centisome-position: ** 29.480053...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ12148 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 113423 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 106581 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 29.480053 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[CDPDIGLYSYN-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[DIACYLGLYKIN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | * [[RXN-12959]] |
| − | {{#set: right-end-position= | + | ** Category: [[annotation]] |
| − | {{#set: left-end-position= | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
| − | {{#set: centisome-position= | + | * [[RXN-15091]] |
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN0-5515]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[PWY-5981]] | ||
| + | ** '''3''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[PWY0-1319]] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-5667]] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-7817]] | ||
| + | ** '''6''' reactions found over '''16''' reactions in the full pathway | ||
| + | * [[PWY-7039]] | ||
| + | ** '''4''' reactions found over '''5''' reactions in the full pathway | ||
| + | * [[TRIGLSYN-PWY]] | ||
| + | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-7420]] | ||
| + | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=113423}} | ||
| + | {{#set: left-end-position=106581}} | ||
| + | {{#set: centisome-position=29.480053 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| + | {{#set: nb pathway associated=7}} | ||
Revision as of 14:22, 26 August 2019
Contents
Gene SJ12148
- transcription-direction:
- positive
- right-end-position:
- 113423
- left-end-position:
- 106581
- centisome-position:
- 29.480053
Organism(s) associated with this gene
Reaction(s) associated
- CDPDIGLYSYN-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- DIACYLGLYKIN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12959
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-15091
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN0-5515
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-5981
- 3 reactions found over 5 reactions in the full pathway
- PWY0-1319
- 4 reactions found over 4 reactions in the full pathway
- PWY-5667
- 4 reactions found over 4 reactions in the full pathway
- PWY-7817
- 6 reactions found over 16 reactions in the full pathway
- PWY-7039
- 4 reactions found over 5 reactions in the full pathway
- TRIGLSYN-PWY
- 5 reactions found over 7 reactions in the full pathway
- PWY-7420
- 4 reactions found over 4 reactions in the full pathway
