Difference between revisions of "SJ04280"
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(Created page with "Category:gene == Gene SJ20222 == * transcription-direction: ** negative * right-end-position: ** 182208 * left-end-position: ** 167260 * centisome-position: ** 79.196205...") |
(Created page with "Category:gene == Gene SJ03226 == * transcription-direction: ** positive * right-end-position: ** 188306 * left-end-position: ** 138541 * centisome-position: ** 26.23187...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ03226 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 188306 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 138541 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 26.23187 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[RXN- | + | * [[HOMOCYSMET-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[HOMOCYSMETB12-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | * [[HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN]] |
| − | {{#set: centisome-position= | + | ** Category: [[annotation]] |
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[PWY-5041]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[HSERMETANA-PWY]] | ||
| + | ** '''3''' reactions found over '''2''' reactions in the full pathway | ||
| + | * [[HOMOSER-METSYN-PWY]] | ||
| + | ** '''4''' reactions found over '''7''' reactions in the full pathway | ||
| + | * [[PWY-6151]] | ||
| + | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY-702]] | ||
| + | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-3841]] | ||
| + | ** '''9''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[1CMET2-PWY]] | ||
| + | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
| + | * [[ADENOSYLHOMOCYSCAT-PWY]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-2201]] | ||
| + | ** '''9''' reactions found over '''12''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=188306}} | ||
| + | {{#set: left-end-position=138541}} | ||
| + | {{#set: centisome-position=26.23187 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| + | {{#set: nb pathway associated=9}} | ||
Revision as of 14:22, 26 August 2019
Contents
Gene SJ03226
- transcription-direction:
- positive
- right-end-position:
- 188306
- left-end-position:
- 138541
- centisome-position:
- 26.23187
Organism(s) associated with this gene
Reaction(s) associated
- HOMOCYSMET-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- HOMOCYSMETB12-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- HOMOCYSTEINE-S-METHYLTRANSFERASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5041
- 3 reactions found over 4 reactions in the full pathway
- HSERMETANA-PWY
- 3 reactions found over 2 reactions in the full pathway
- HOMOSER-METSYN-PWY
- 4 reactions found over 7 reactions in the full pathway
- PWY-6151
- 3 reactions found over 4 reactions in the full pathway
- PWY-702
- 5 reactions found over 6 reactions in the full pathway
- PWY-3841
- 9 reactions found over 11 reactions in the full pathway
- 1CMET2-PWY
- 8 reactions found over 9 reactions in the full pathway
- ADENOSYLHOMOCYSCAT-PWY
- 3 reactions found over 3 reactions in the full pathway
- PWY-2201
- 9 reactions found over 12 reactions in the full pathway
