Difference between revisions of "SJ04318"

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(Created page with "Category:gene == Gene SJ00173 == * transcription-direction: ** negative * right-end-position: ** 60261 * left-end-position: ** 46978 * centisome-position: ** 27.521765...")
(Created page with "Category:gene == Gene SJ19144 == * transcription-direction: ** positive * right-end-position: ** 85373 * left-end-position: ** 75227 * centisome-position: ** 11.757654...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00173 ==
+
== Gene SJ19144 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 60261
+
** 85373
 
* left-end-position:
 
* left-end-position:
−
** 46978
+
** 75227
 
* centisome-position:
 
* centisome-position:
−
** 27.521765    
+
** 11.757654    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[FPPS]]
+
* [[QUINOPRIBOTRANS-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[FPPSYN-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[GPPSYN-RXN]]
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-5653]]
−
* [[PWY-6859]]
 
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7736]]
+
* [[PYRIDNUCSYN-PWY]]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7102]]
+
* [[PWY-7342]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7721]]
+
* [[PWY-5316]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5123]]
+
{{#set: transcription-direction=positive}}
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
{{#set: right-end-position=85373}}
−
* [[PWY-6383]]
+
{{#set: left-end-position=75227}}
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
{{#set: centisome-position=11.757654   }}
−
* [[PWY-7410]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5122]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
* [[PWY-7141]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7659]]
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7709]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7182]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=60261}}
 
−
{{#set: left-end-position=46978}}
 
−
{{#set: centisome-position=27.521765   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=12}}
+
{{#set: nb pathway associated=4}}

Revision as of 08:15, 15 March 2021

Gene SJ19144

  • transcription-direction:
    • positive
  • right-end-position:
    • 85373
  • left-end-position:
    • 75227
  • centisome-position:
    • 11.757654

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5653
    • 3 reactions found over 4 reactions in the full pathway
  • PYRIDNUCSYN-PWY
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7342
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-5316
    • 3 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04318&oldid=119419"