Difference between revisions of "SJ04393"

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(Created page with "Category:gene == Gene SJ14668 == * transcription-direction: ** negative * right-end-position: ** 142204 * left-end-position: ** 120668 * centisome-position: ** 38.84509...")
(Created page with "Category:gene == Gene SJ04393 == * transcription-direction: ** positive * right-end-position: ** 12820 * left-end-position: ** 7673 * centisome-position: ** 7.1205845...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ14668 ==
+
== Gene SJ04393 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 142204
+
** 12820
 
* left-end-position:
 
* left-end-position:
−
** 120668
+
** 7673
 
* centisome-position:
 
* centisome-position:
−
** 38.84509    
+
** 7.1205845    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[PEPCARBOXYKIN-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[RXN-14950]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-14957]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-14959]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17127]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8654]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8655]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-949]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7117]]
+
* [[PWY-7382]]
−
** '''10''' reactions found over '''12''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-561]]
+
* [[PWY0-522]]
−
** '''6''' reactions found over '''4''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[GLUCONEO-PWY]]
+
* [[PWY-6984]]
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-6987]]
−
{{#set: right-end-position=142204}}
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
{{#set: left-end-position=120668}}
+
* [[PWY0-1275]]
−
{{#set: centisome-position=38.84509   }}
+
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-501]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=12820}}
 +
{{#set: left-end-position=7673}}
 +
{{#set: centisome-position=7.1205845   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=6}}

Latest revision as of 11:09, 18 March 2021

Gene SJ04393

  • transcription-direction:
    • positive
  • right-end-position:
    • 12820
  • left-end-position:
    • 7673
  • centisome-position:
    • 7.1205845

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7382
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-522
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6984
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6987
    • 2 reactions found over 3 reactions in the full pathway
  • PWY0-1275
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-501
    • 2 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04393&oldid=135789"