Difference between revisions of "SJ04397"

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(Created page with "Category:gene == Gene SJ15529 == * transcription-direction: ** negative * right-end-position: ** 143017 * left-end-position: ** 137617 * centisome-position: ** 46.80707...")
 
(Created page with "Category:gene == Gene SJ04397 == * transcription-direction: ** positive * right-end-position: ** 107199 * left-end-position: ** 79519 * centisome-position: ** 73.79405...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ15529 ==
+
== Gene SJ04397 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 143017
+
** 107199
 
* left-end-position:
 
* left-end-position:
−
** 137617
+
** 79519
 
* centisome-position:
 
* centisome-position:
−
** 46.80707    
+
** 73.79405    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[3PGAREARR-RXN]]
+
* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-15509]]
+
* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
−
** Category: [[annotation]]
+
** Category: [[orthology]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-15510]]
+
* [[HISTONE-LYSINE-N-METHYLTRANSFERASE-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15511]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15512]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15513]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7539]]
−
* [[PWY-6142]]
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-6797]]
−
* [[PWY-7003]]
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** '''8''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-6147]]
−
* [[PWY-7218]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
** '''7''' reactions found over '''4''' reactions in the full pathway
+
{{#set: transcription-direction=positive}}
−
* [[GLYCOLYSIS]]
+
{{#set: right-end-position=107199}}
−
** '''11''' reactions found over '''12''' reactions in the full pathway
+
{{#set: left-end-position=79519}}
−
* [[P341-PWY]]
+
{{#set: centisome-position=73.79405   }}
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5723]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P124-PWY]]
 
−
** '''12''' reactions found over '''15''' reactions in the full pathway
 
−
* [[PWY-2221]]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-5484]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-1042]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6886]]
 
−
** '''8''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6901]]
 
−
** '''10''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7124]]
 
−
** '''8''' reactions found over '''8''' reactions in the full pathway
 
−
* [[GLUCONEO-PWY]]
 
−
** '''12''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-6405]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[P122-PWY]]
 
−
** '''16''' reactions found over '''18''' reactions in the full pathway
 
−
* [[PWY-1622]]
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[ANAGLYCOLYSIS-PWY]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY66-399]]
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=143017}}
 
−
{{#set: left-end-position=137617}}
 
−
{{#set: centisome-position=46.80707   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=3}}

Latest revision as of 11:10, 18 March 2021

Gene SJ04397

  • transcription-direction:
    • positive
  • right-end-position:
    • 107199
  • left-end-position:
    • 79519
  • centisome-position:
    • 73.79405

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6147
    • 5 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04397&oldid=136475"