Difference between revisions of "SJ04442"
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(Created page with "Category:gene == Gene SJ03081 == * transcription-direction: ** positive * right-end-position: ** 83767 * left-end-position: ** 81388 * centisome-position: ** 64.91462...") |
(Created page with "Category:gene == Gene SJ04442 == * transcription-direction: ** negative * right-end-position: ** 452928 * left-end-position: ** 440350 * centisome-position: ** 86.19879...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ04442 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 452928 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 440350 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 86.19879 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[LUMAZINESYN-RXN]] |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-9003]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-9384]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN0-5180]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[PWY-6167]] |
| − | ** '''3''' reactions found over ''' | + | ** '''5''' reactions found over '''10''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6168]] |
| − | ** ''' | + | ** '''7''' reactions found over '''9''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[RIBOSYN2-PWY]] |
| − | {{#set: right-end-position= | + | ** '''8''' reactions found over '''9''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-7235]] |
| − | {{#set: centisome-position= | + | ** '''3''' reactions found over '''n.a''' reactions in the full pathway |
| + | * [[PWY3O-19]] | ||
| + | ** '''4''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-5815]] | ||
| + | ** '''1''' reactions found over '''2''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=452928}} | ||
| + | {{#set: left-end-position=440350}} | ||
| + | {{#set: centisome-position=86.19879 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=4}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=6}} |
Latest revision as of 11:06, 18 March 2021
Contents
Gene SJ04442
- transcription-direction:
- negative
- right-end-position:
- 452928
- left-end-position:
- 440350
- centisome-position:
- 86.19879
Organism(s) associated with this gene
Reaction(s) associated
- LUMAZINESYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-9003
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-9384
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN0-5180
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-6167
- 5 reactions found over 10 reactions in the full pathway
- PWY-6168
- 7 reactions found over 9 reactions in the full pathway
- RIBOSYN2-PWY
- 8 reactions found over 9 reactions in the full pathway
- PWY-7235
- 3 reactions found over n.a reactions in the full pathway
- PWY3O-19
- 4 reactions found over 8 reactions in the full pathway
- PWY-5815
- 1 reactions found over 2 reactions in the full pathway
