Difference between revisions of "SJ04717"
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(Created page with "Category:gene == Gene SJ13517 == * transcription-direction: ** negative * right-end-position: ** 334447 * left-end-position: ** 312179 * centisome-position: ** 93.299446...") |
(Created page with "Category:gene == Gene SJ04717 == * transcription-direction: ** positive * right-end-position: ** 133911 * left-end-position: ** 126274 * centisome-position: ** 24.949419...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ04717 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 133911 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 126274 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 24.949419 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[2-ISOPROPYLMALATESYN-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | * [[IPMS]] |
| − | {{#set: right-end-position= | + | ** Category: [[orthology]] |
| − | {{#set: left-end-position= | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: centisome-position= | + | == Pathway(s) associated == |
| + | * [[LEUSYN-PWY]] | ||
| + | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-6871]] | ||
| + | ** '''5''' reactions found over '''7''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=133911}} | ||
| + | {{#set: left-end-position=126274}} | ||
| + | {{#set: centisome-position=24.949419 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=2}} |
| + | {{#set: nb pathway associated=2}} | ||
Latest revision as of 11:06, 18 March 2021
Contents
Gene SJ04717
- transcription-direction:
- positive
- right-end-position:
- 133911
- left-end-position:
- 126274
- centisome-position:
- 24.949419
Organism(s) associated with this gene
Reaction(s) associated
- 2-ISOPROPYLMALATESYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- IPMS
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- LEUSYN-PWY
- 5 reactions found over 6 reactions in the full pathway
- PWY-6871
- 5 reactions found over 7 reactions in the full pathway
