Difference between revisions of "SJ04955"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=APS APS] == * common-name: ** adenosine 5'-phosphosulfate * smiles: ** c(c3(c(c(c(n2(c1(=c(c(=n...")
(Created page with "Category:gene == Gene SJ04955 == * transcription-direction: ** positive * right-end-position: ** 247245 * left-end-position: ** 236604 * centisome-position: ** 24.50245...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=APS APS] ==
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== Gene SJ04955 ==
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* common-name:
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* transcription-direction:
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** adenosine 5'-phosphosulfate
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** positive
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* smiles:
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* right-end-position:
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** c(c3(c(c(c(n2(c1(=c(c(=nc=n1)n)n=c2)))o3)o)o))op(os(=o)([o-])=o)([o-])=o
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** 247245
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* inchi-key:
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* left-end-position:
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** irlpacmltupbcl-kqynxxcusa-l
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** 236604
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* molecular-weight:
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* centisome-position:
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** 425.266
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** 24.50245   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[1.8.4.9-RXN]]
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* [[S.japonica_carotenoid_curated]]
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* [[ADENYLYLSULFATASE-RXN]]
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== Reaction(s) associated ==
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* [[ADENYLYLSULFATE-REDUCTASE-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[ADENYLYLSULFKIN-RXN]]
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* [[4-NITROPHENYLPHOSPHATASE-RXN]]
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* [[R163-RXN]]
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** Category: [[annotation]]
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* [[RXN-12019]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[SULFATE-ADENYLYLTRANS-RXN]]
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* [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
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* [[SULFATE-ADENYLYLTRANSFERASE-ADP-RXN]]
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[ADENYLYLSULFATE-REDUCTASE-RXN]]
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** Category: [[orthology]]
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* [[ADENYLYLSULFKIN-RXN]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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* [[R163-RXN]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[SULFATE-ADENYLYLTRANS-RXN]]
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* [[RXN-10949]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=adenosine 5'-phosphosulfate}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=irlpacmltupbcl-kqynxxcusa-l}}
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** Category: [[orthology]]
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{{#set: molecular-weight=425.266}}
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10952]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10953]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10954]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-7253]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-5408]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXNQT-4142]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-2301]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-6363]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-4702]]
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** '''3''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-882]]
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** '''6''' reactions found over '''5''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=247245}}
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{{#set: left-end-position=236604}}
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{{#set: centisome-position=24.50245    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=9}}
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{{#set: nb pathway associated=4}}

Latest revision as of 11:02, 18 March 2021

Gene SJ04955

  • transcription-direction:
    • positive
  • right-end-position:
    • 247245
  • left-end-position:
    • 236604
  • centisome-position:
    • 24.50245

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-2301
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6363
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-4702
    • 3 reactions found over 14 reactions in the full pathway
  • PWY-882
    • 6 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04955&oldid=132586"