Difference between revisions of "SJ04979"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ00834 == * transcription-direction: ** positive * right-end-position: ** 537681 * left-end-position: ** 535749 * centisome-position: ** 95.86016...")
(Created page with "Category:gene == Gene SJ04979 == * transcription-direction: ** positive * right-end-position: ** 561531 * left-end-position: ** 543693 * centisome-position: ** 56.304253...")
 
(2 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00834 ==
+
== Gene SJ04979 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 537681
+
** 561531
 
* left-end-position:
 
* left-end-position:
−
** 535749
+
** 543693
 
* centisome-position:
 
* centisome-position:
−
** 95.86016    
+
** 56.304253    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PRPPAMIDOTRANS-RXN]]
−
* [[1.14.21.6-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-11887]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-13883]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13892]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16378]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-4209]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN3O-218]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY66-341]]
+
* [[PWY-7282]]
−
** '''14''' reactions found over '''18''' reactions in the full pathway
+
** '''6''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY66-3]]
+
* [[PWY-6277]]
−
** '''12''' reactions found over '''18''' reactions in the full pathway
+
** '''6''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY66-4]]
+
* [[PWY-6121]]
−
** '''14''' reactions found over '''4''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7154]]
+
* [[PWY-6122]]
−
** '''2''' reactions found over '''11''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7155]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-2541]]
 
−
** '''11''' reactions found over '''35''' reactions in the full pathway
 
−
* [[PWY-6075]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=537681}}
+
{{#set: right-end-position=561531}}
−
{{#set: left-end-position=535749}}
+
{{#set: left-end-position=543693}}
−
{{#set: centisome-position=95.86016   }}
+
{{#set: centisome-position=56.304253   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:09, 18 March 2021

Gene SJ04979

  • transcription-direction:
    • positive
  • right-end-position:
    • 561531
  • left-end-position:
    • 543693
  • centisome-position:
    • 56.304253

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7282
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-6277
    • 6 reactions found over 5 reactions in the full pathway
  • PWY-6121
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6122
    • 4 reactions found over 5 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ04979&oldid=135707"