Difference between revisions of "SJ05283"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ05660 == * transcription-direction: ** positive * right-end-position: ** 25978 * left-end-position: ** 384 * centisome-position: ** 7.78922100e-2 =...")
(Created page with "Category:gene == Gene SJ05283 == * transcription-direction: ** negative * right-end-position: ** 67687 * left-end-position: ** 62093 * centisome-position: ** 65.74932...")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05660 ==
+
== Gene SJ05283 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 25978
+
** 67687
 
* left-end-position:
 
* left-end-position:
−
** 384
+
** 62093
 
* centisome-position:
 
* centisome-position:
−
** 7.78922100e-2
+
** 65.74932   
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[2.7.8.23-RXN]]
−
* [[RXN-11519]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11520]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11521]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12615]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7682]]
+
* [[ISOCIT-CLEAV-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-10827]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN0-901]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-10828]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[XANTHINE-OXIDASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[P105-PWY]]
−
* [[PWY-6632]]
+
** '''10''' reactions found over '''9''' reactions in the full pathway
−
** '''4''' reactions found over '''3''' reactions in the full pathway
+
* [[PWY-6969]]
−
* [[PWY-6596]]
+
** '''10''' reactions found over '''9''' reactions in the full pathway
−
** '''7''' reactions found over '''8''' reactions in the full pathway
+
* [[GLYOXYLATE-BYPASS]]
−
* [[P164-PWY]]
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
** '''6''' reactions found over '''17''' reactions in the full pathway
+
* [[PWY-7769]]
−
* [[SALVADEHYPOX-PWY]]
+
** '''2''' reactions found over '''25''' reactions in the full pathway
−
** '''5''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-6322]]
−
* [[PWY-5497]]
+
** '''2''' reactions found over '''25''' reactions in the full pathway
−
** '''10''' reactions found over '''24''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-6606]]
+
{{#set: right-end-position=67687}}
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
{{#set: left-end-position=62093}}
−
* [[PWY-6607]]
+
{{#set: centisome-position=65.74932    }}
−
** '''3''' reactions found over '''4''' reactions in the full pathway
+
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
* [[PWY-6999]]
+
{{#set: nb reaction associated=4}}
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
{{#set: nb pathway associated=5}}
−
* [[PWY-6608]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-6538]]
 
−
** '''2''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5695]]
 
−
** '''4''' reactions found over '''4''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=25978}}
 
−
{{#set: left-end-position=384}}
 
−
{{#set: centisome-position=7.78922100e-2}}
 
−
{{#set: organism associated=S.japonica_sterols_curated}}
 
−
{{#set: nb reaction associated=7}}
 
−
{{#set: nb pathway associated=11}}
 

Latest revision as of 11:10, 18 March 2021

Gene SJ05283

  • transcription-direction:
    • negative
  • right-end-position:
    • 67687
  • left-end-position:
    • 62093
  • centisome-position:
    • 65.74932

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P105-PWY
    • 10 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 10 reactions found over 9 reactions in the full pathway
  • GLYOXYLATE-BYPASS
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7769
    • 2 reactions found over 25 reactions in the full pathway
  • PWY-6322
    • 2 reactions found over 25 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05283&oldid=136396"