Difference between revisions of "SJ05357"

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(Created page with "Category:gene == Gene SJ02922 == * transcription-direction: ** positive * right-end-position: ** 441590 * left-end-position: ** 430736 * centisome-position: ** 81.104294...")
(Created page with "Category:gene == Gene SJ05357 == * transcription-direction: ** negative * right-end-position: ** 293019 * left-end-position: ** 288900 * centisome-position: ** 58.19716...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ02922 ==
+
== Gene SJ05357 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 441590
+
** 293019
 
* left-end-position:
 
* left-end-position:
−
** 430736
+
** 288900
 
* centisome-position:
 
* centisome-position:
−
** 81.104294    
+
** 58.19716    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[1.5.1.15-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[HOMOSERDEAM-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DIHYDROFOLATEREDUCT-RXN]]
+
* [[LCYSDESULF-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[METHYLENETHFDEHYDROG-NADP-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[O-SUCCHOMOSERLYASE-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[MTHFD2]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-14048]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[MTHFD2i]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-14049]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-15129]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-15130]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-2201]]
+
* [[PWY66-426]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[1CMET2-PWY]]
+
* [[PWY-I9]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-3841]]
+
* [[PWY-801]]
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-6614]]
 
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-5497]]
 
−
** '''10''' reactions found over '''24''' reactions in the full pathway
 
−
* [[CODH-PWY]]
 
−
** '''4''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-7909]]
 
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-1722]]
+
* [[HOMOSER-METSYN-PWY]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''5''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[HOMOCYSDEGR-PWY]]
−
{{#set: right-end-position=441590}}
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
{{#set: left-end-position=430736}}
+
* [[LCYSDEG-PWY]]
−
{{#set: centisome-position=81.104294   }}
+
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=293019}}
 +
{{#set: left-end-position=288900}}
 +
{{#set: centisome-position=58.19716   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=7}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=6}}

Latest revision as of 11:07, 18 March 2021

Gene SJ05357

  • transcription-direction:
    • negative
  • right-end-position:
    • 293019
  • left-end-position:
    • 288900
  • centisome-position:
    • 58.19716

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY66-426
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-I9
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-801
    • 3 reactions found over 4 reactions in the full pathway
  • HOMOSER-METSYN-PWY
    • 4 reactions found over 5 reactions in the full pathway
  • HOMOCYSDEGR-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • LCYSDEG-PWY
    • 1 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05357&oldid=135047"