Difference between revisions of "SJ05398"

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(Created page with "Category:gene == Gene SJ19669 == * transcription-direction: ** negative * right-end-position: ** 369144 * left-end-position: ** 350818 * centisome-position: ** 55.55955...")
(Created page with "Category:gene == Gene SJ03269 == * transcription-direction: ** positive * right-end-position: ** 51052 * left-end-position: ** 38904 * centisome-position: ** 31.612307...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ19669 ==
+
== Gene SJ03269 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 369144
+
** 51052
 
* left-end-position:
 
* left-end-position:
−
** 350818
+
** 38904
 
* centisome-position:
 
* centisome-position:
−
** 55.55955    
+
** 31.612307    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ACOAD1f]]
+
* [[RXN-8988]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACYL-COA-OXIDASE-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ACYLCOADEHYDROG-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[BUTYRYL-COA-DEHYDROGENASE-RXN]]
+
* [[SUCCCOASYN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-10696]]
+
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10706]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10707]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-11026]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12518]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12669]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13449]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14264]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14576]]
+
* [[SUCL_LPAREN_gdp_RPAREN_m]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-14771]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14775]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14785]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14789]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-14796]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16134]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-17113]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[FAO-PWY]]
+
* [[PWY-5749]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-6583]]
+
* [[P42-PWY]]
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5022]]
 
−
** '''3''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-5676]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[P163-PWY]]
 
−
** '''3''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5677]]
 
−
** '''1''' reactions found over '''7''' reactions in the full pathway
 
−
* [[CENTFERM-PWY]]
 
 
** '''5''' reactions found over '''7''' reactions in the full pathway
 
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[P162-PWY]]
+
* [[PWY-5392]]
−
** '''7''' reactions found over '''11''' reactions in the full pathway
 
−
* [[P3-PWY]]
 
−
** '''3''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-735]]
 
−
** '''16''' reactions found over '''19''' reactions in the full pathway
 
−
* [[PWY-7007]]
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7288]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5136]]
 
−
** '''5''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY66-391]]
 
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-6837]]
 
−
** '''4''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-6920]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-7291]]
 
−
** '''2''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-7337]]
 
−
** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7338]]
 
 
** '''6''' reactions found over '''12''' reactions in the full pathway
 
** '''6''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-7340]]
+
* [[PWY-5690]]
−
** '''5''' reactions found over '''10''' reactions in the full pathway
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7606]]
+
* [[PWY66-398]]
−
** '''8''' reactions found over '''14''' reactions in the full pathway
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
* [[PWY-7726]]
+
* [[PWY-6969]]
−
** '''8''' reactions found over '''13''' reactions in the full pathway
+
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-5913]]
 +
** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5538]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5537]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[TCA]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
* [[P23-PWY]]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-6728]]
 +
** '''11''' reactions found over '''19''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: transcription-direction=negative}}
+
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=369144}}
+
{{#set: right-end-position=51052}}
−
{{#set: left-end-position=350818}}
+
{{#set: left-end-position=38904}}
−
{{#set: centisome-position=55.55955   }}
+
{{#set: centisome-position=31.612307   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=21}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=22}}
+
{{#set: nb pathway associated=13}}

Revision as of 11:12, 15 January 2021

Gene SJ03269

  • transcription-direction:
    • positive
  • right-end-position:
    • 51052
  • left-end-position:
    • 38904
  • centisome-position:
    • 31.612307

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5749
    • 1 reactions found over 4 reactions in the full pathway
  • P42-PWY
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 6 reactions found over 12 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY66-398
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-6969
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-5538
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5537
    • 2 reactions found over 2 reactions in the full pathway
  • TCA
    • 9 reactions found over 10 reactions in the full pathway
  • P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWY-7384
    • 6 reactions found over 10 reactions in the full pathway
  • PWY-6728
    • 11 reactions found over 19 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05398&oldid=110509"