Difference between revisions of "SJ05398"

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(Created page with "Category:gene == Gene SJ03269 == * transcription-direction: ** positive * right-end-position: ** 51052 * left-end-position: ** 38904 * centisome-position: ** 31.612307...")
(Created page with "Category:gene == Gene SJ19165 == == Organism(s) associated with this gene == * S.japonica_carotenoid_curated == Reaction(s) associated == * DIHYDRONEOPTERIN-MONO-P-...")
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[[Category:gene]]
 
[[Category:gene]]
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== Gene SJ03269 ==
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== Gene SJ19165 ==
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* transcription-direction:
 
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** positive
 
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* right-end-position:
 
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** 51052
 
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* left-end-position:
 
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** 38904
 
−
* centisome-position:
 
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** 31.612307   
 
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[DIHYDRONEOPTERIN-MONO-P-DEPHOS-RXN]]
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* [[RXN-8988]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[SUCCCOASYN-RXN]]
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* [[H2NEOPTERINP3PYROPHOSPHOHYDRO-RXN]]
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
 
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** Category: [[annotation]]
 
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
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* [[SUCL_LPAREN_gdp_RPAREN_m]]
 
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** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7539]]
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* [[PWY-5749]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6797]]
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* [[P42-PWY]]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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** '''5''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6147]]
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* [[PWY-5392]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** '''6''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5690]]
 
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
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** '''10''' reactions found over '''10''' reactions in the full pathway
 
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* [[PWY-6969]]
 
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** '''10''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-5913]]
 
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** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5538]]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5537]]
 
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
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* [[TCA]]
 
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[P23-PWY]]
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY-7384]]
 
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** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
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** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
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{{#set: transcription-direction=positive}}
 
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{{#set: right-end-position=51052}}
 
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{{#set: left-end-position=38904}}
 
−
{{#set: centisome-position=31.612307    }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=3}}

Revision as of 08:23, 15 March 2021

Gene SJ19165

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7539
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-6797
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-6147
    • 5 reactions found over 5 reactions in the full pathway


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