Difference between revisions of "SJ05398"

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(Created page with "Category:gene == Gene SJ03269 == * transcription-direction: ** positive * right-end-position: ** 51052 * left-end-position: ** 38904 * centisome-position: ** 31.612307...")
(Created page with "Category:gene == Gene SJ07490 == * transcription-direction: ** negative * right-end-position: ** 198412 * left-end-position: ** 156830 * centisome-position: ** 34.457302...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ03269 ==
+
== Gene SJ07490 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 51052
+
** 198412
 
* left-end-position:
 
* left-end-position:
−
** 38904
+
** 156830
 
* centisome-position:
 
* centisome-position:
−
** 31.612307    
+
** 34.457302    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[13-BETA-GLUCAN-SYNTHASE-RXN]]
−
* [[RXN-8988]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[SUCCCOASYN-RXN]]
+
* [[PHENOL-BETA-GLUCOSYLTRANSFERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-15117]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[SUCCINATE--COA-LIGASE-GDP-FORMING-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[SUCL_LPAREN_gdp_RPAREN_m]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-6773]]
−
* [[PWY-5749]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-7817]]
−
* [[P42-PWY]]
+
** '''6''' reactions found over '''16''' reactions in the full pathway
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-5392]]
+
{{#set: right-end-position=198412}}
−
** '''6''' reactions found over '''12''' reactions in the full pathway
+
{{#set: left-end-position=156830}}
−
* [[PWY-5690]]
+
{{#set: centisome-position=34.457302   }}
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]]
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6969]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-5913]]
 
−
** '''10''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5538]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-5537]]
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[TCA]]
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[P23-PWY]]
 
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7384]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-6728]]
 
−
** '''11''' reactions found over '''19''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=51052}}
 
−
{{#set: left-end-position=38904}}
 
−
{{#set: centisome-position=31.612307   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=4}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=13}}
+
{{#set: nb pathway associated=2}}

Revision as of 15:24, 5 January 2021

Gene SJ07490

  • transcription-direction:
    • negative
  • right-end-position:
    • 198412
  • left-end-position:
    • 156830
  • centisome-position:
    • 34.457302

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6773
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7817
    • 6 reactions found over 16 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05398&oldid=71423"