Difference between revisions of "SJ05456"

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(Created page with "Category:gene == Gene SJ05858 == * transcription-direction: ** negative * right-end-position: ** 69113 * left-end-position: ** 58778 * centisome-position: ** 67.518234...")
(Created page with "Category:gene == Gene SJ00040 == * transcription-direction: ** positive * right-end-position: ** 616633 * left-end-position: ** 611459 * centisome-position: ** 41.62261...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ05858 ==
+
== Gene SJ00040 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 69113
+
** 616633
 
* left-end-position:
 
* left-end-position:
−
** 58778
+
** 611459
 
* centisome-position:
 
* centisome-position:
−
** 67.518234    
+
** 41.62261    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[ARACHIDONATE-15-LIPOXYGENASE-RXN]]
+
* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ARACHIDONATE-5-LIPOXYGENASE-RXN]]
+
* [[ECH_LPAREN_3hivcoa_RPAREN_]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ECH_LPAREN_3hmbcoa_RPAREN_]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ECOAH5m]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[HBCHLm]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-12567]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13616]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13721]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-1321]]
+
* [[RXN-14272]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14273]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-6383]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[RXN-6384]]
−
* [[RXN-13395]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-8497]]
+
* [[RXN1K-87]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-8647]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY66-375]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[VALDEG-PWY]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6863]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7094]]
 
** '''5''' reactions found over '''6''' reactions in the full pathway
 
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5410]]
+
* [[PWY-7656]]
−
** '''2''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''22''' reactions in the full pathway
−
* [[PWY-735]]
+
* [[PWY-7654]]
−
** '''16''' reactions found over '''19''' reactions in the full pathway
+
** '''5''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY66-392]]
+
* [[PWY-3941]]
−
** '''1''' reactions found over '''11''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6917]]
+
* [[PWY-5744]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-5406]]
+
* [[PWY-7574]]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5407]]
+
* [[PWY-5743]]
−
** '''1''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-5408]]
+
* [[PWY-5789]]
−
** '''1''' reactions found over '''4''' reactions in the full pathway
+
** '''8''' reactions found over '''18''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
</div>
−
{{#set: right-end-position=69113}}
+
{{#set: transcription-direction=positive}}
−
{{#set: left-end-position=58778}}
+
{{#set: right-end-position=616633}}
−
{{#set: centisome-position=67.518234   }}
+
{{#set: left-end-position=611459}}
 +
{{#set: centisome-position=41.62261   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=13}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=10}}

Revision as of 15:18, 5 January 2021

Gene SJ00040

  • transcription-direction:
    • positive
  • right-end-position:
    • 616633
  • left-end-position:
    • 611459
  • centisome-position:
    • 41.62261

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-6863
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7094
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7656
    • 4 reactions found over 22 reactions in the full pathway
  • PWY-7654
    • 5 reactions found over 11 reactions in the full pathway
  • PWY-3941
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-7574
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05456&oldid=68585"