Difference between revisions of "SJ05456"

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(Created page with "Category:gene == Gene SJ00040 == * transcription-direction: ** positive * right-end-position: ** 616633 * left-end-position: ** 611459 * centisome-position: ** 41.62261...")
(Created page with "Category:gene == Gene SJ17412 == * transcription-direction: ** positive * right-end-position: ** 164770 * left-end-position: ** 157751 * centisome-position: ** 59.997795...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00040 ==
+
== Gene SJ17412 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 616633
+
** 164770
 
* left-end-position:
 
* left-end-position:
−
** 611459
+
** 157751
 
* centisome-position:
 
* centisome-position:
−
** 41.62261    
+
** 59.997795    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3-HYDROXYISOBUTYRYL-COA-HYDROLASE-RXN]]
+
* [[1.4.3.19-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ECH_LPAREN_3hivcoa_RPAREN_]]
+
* [[RXN-11319]]
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ECH_LPAREN_3hmbcoa_RPAREN_]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[ECOAH5m]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[HBCHLm]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-12567]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13616]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-13721]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14272]]
+
* [[RXN-12614]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14273]]
+
* [[RXN-17951]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-6383]]
+
* [[RXN-8672]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-6384]]
+
* [[RXN-8673]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8674]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[THIAZOLSYN2-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN1K-87]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7396]]
−
* [[VALDEG-PWY]]
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
** '''6''' reactions found over '''8''' reactions in the full pathway
+
* [[PWY-6892]]
−
* [[PWY-6863]]
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
** '''9''' reactions found over '''11''' reactions in the full pathway
+
* [[PWY-6891]]
−
* [[PWY-7094]]
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7806]]
−
* [[PWY-7656]]
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
** '''4''' reactions found over '''22''' reactions in the full pathway
 
−
* [[PWY-7654]]
 
−
** '''5''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-3941]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-5744]]
 
−
** '''4''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-7574]]
 
−
** '''3''' reactions found over '''5''' reactions in the full pathway
 
−
* [[PWY-5743]]
 
−
** '''5''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5789]]
 
−
** '''8''' reactions found over '''18''' reactions in the full pathway
 
−
</div>
 
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=616633}}
+
{{#set: right-end-position=164770}}
−
{{#set: left-end-position=611459}}
+
{{#set: left-end-position=157751}}
−
{{#set: centisome-position=41.62261   }}
+
{{#set: centisome-position=59.997795   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=13}}
+
{{#set: nb reaction associated=8}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=4}}

Revision as of 13:01, 14 January 2021

Gene SJ17412

  • transcription-direction:
    • positive
  • right-end-position:
    • 164770
  • left-end-position:
    • 157751
  • centisome-position:
    • 59.997795

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7396
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-6892
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-6891
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7806
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05456&oldid=81614"