Difference between revisions of "SJ05644"

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(Created page with "Category:gene == Gene SJ16890 == * transcription-direction: ** negative * right-end-position: ** 49524 * left-end-position: ** 8160 * centisome-position: ** 2.9598355...")
(Created page with "Category:gene == Gene SJ05644 == * transcription-direction: ** positive * right-end-position: ** 54943 * left-end-position: ** 39039 * centisome-position: ** 43.445213...")
 
(One intermediate revision by one other user not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ16890 ==
+
== Gene SJ05644 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 49524
+
** 54943
 
* left-end-position:
 
* left-end-position:
−
** 8160
+
** 39039
 
* centisome-position:
 
* centisome-position:
−
** 2.9598355    
+
** 43.445213    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[UBIQUITIN--PROTEIN-LIGASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ALCD19]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ALCDH_LPAREN_nadp_RPAREN_hi]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ALCDH_LPAREN_nadp_RPAREN_i]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[ALCOHOL-DEHYDROGENASE-NADP+-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ALDEHYDE-REDUCTASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[GLUCURONATE-REDUCTASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[GLYCEROL-DEHYDROGENASE-NADP+-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10717]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12078]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12484]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14023]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14102]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8772]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8773]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7511]]
+
* [[PWY-5525]]
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY3DJ-35471]]
−
{{#set: right-end-position=49524}}
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
{{#set: left-end-position=8160}}
+
* [[PWY-6307]]
−
{{#set: centisome-position=2.9598355   }}
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6693]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7178]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5515]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5516]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=54943}}
 +
{{#set: left-end-position=39039}}
 +
{{#set: centisome-position=43.445213   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=15}}
−
{{#set: nb pathway associated=1}}
+
{{#set: nb pathway associated=7}}

Latest revision as of 11:03, 18 March 2021

Gene SJ05644

  • transcription-direction:
    • positive
  • right-end-position:
    • 54943
  • left-end-position:
    • 39039
  • centisome-position:
    • 43.445213

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5525
    • 2 reactions found over 5 reactions in the full pathway
  • PWY3DJ-35471
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-6307
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6693
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7178
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5515
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5516
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05644&oldid=132836"