Difference between revisions of "SJ05644"
Jump to navigation
Jump to search
(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-19167 CPD-19167] == * common-name: ** 3-oxo-(7z)-hexadecenoyl-coa * smiles: ** ccccccccc=cc...") |
(Created page with "Category:gene == Gene SJ05644 == * transcription-direction: ** positive * right-end-position: ** 54943 * left-end-position: ** 39039 * centisome-position: ** 43.445213...") |
||
(7 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
− | [[Category: | + | [[Category:gene]] |
− | == | + | == Gene SJ05644 == |
− | * | + | * transcription-direction: |
− | ** | + | ** positive |
− | * | + | * right-end-position: |
− | ** | + | ** 54943 |
− | * | + | * left-end-position: |
− | ** | + | ** 39039 |
− | * | + | * centisome-position: |
− | ** | + | ** 43.445213 |
− | + | == Organism(s) associated with this gene == | |
− | * [[RXN- | + | * [[S.japonica_carotenoid_curated]] |
− | + | == Reaction(s) associated == | |
− | * [[RXN- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
− | == | + | * [[ALCD19]] |
− | {{#set: | + | ** Category: [[orthology]] |
− | {{#set: | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | {{#set: | + | * [[ALCDH_LPAREN_nadp_RPAREN_hi]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ALCDH_LPAREN_nadp_RPAREN_i]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[ALCOHOL-DEHYDROGENASE-NADP+-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[ALDEHYDE-REDUCTASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[GLUCURONATE-REDUCTASE-RXN]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[GLYCEROL-DEHYDROGENASE-NADP+-RXN]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-10717]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12078]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-12484]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14023]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-14102]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-8772]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-8773]] | ||
+ | ** Category: [[annotation]] | ||
+ | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | </div> | ||
+ | == Pathway(s) associated == | ||
+ | * [[PWY-5525]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY3DJ-35471]] | ||
+ | ** '''3''' reactions found over '''6''' reactions in the full pathway | ||
+ | * [[PWY-6307]] | ||
+ | ** '''4''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6693]] | ||
+ | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-7178]] | ||
+ | ** '''1''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-5515]] | ||
+ | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
+ | * [[PWY-5516]] | ||
+ | ** '''1''' reactions found over '''1''' reactions in the full pathway | ||
+ | {{#set: transcription-direction=positive}} | ||
+ | {{#set: right-end-position=54943}} | ||
+ | {{#set: left-end-position=39039}} | ||
+ | {{#set: centisome-position=43.445213 }} | ||
+ | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
+ | {{#set: nb reaction associated=15}} | ||
+ | {{#set: nb pathway associated=7}} |
Latest revision as of 11:03, 18 March 2021
Contents
Gene SJ05644
- transcription-direction:
- positive
- right-end-position:
- 54943
- left-end-position:
- 39039
- centisome-position:
- 43.445213
Organism(s) associated with this gene
Reaction(s) associated
- ALCD19
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ALCDH_LPAREN_nadp_RPAREN_hi
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ALCDH_LPAREN_nadp_RPAREN_i
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ALCOHOL-DEHYDROGENASE-NADP+-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ALCOHOL-DEHYDROGENASE-NADPORNOP+-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- ALDEHYDE-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLUCURONATE-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLYCEROL-DEHYDROGENASE-NADP+-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-10717
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12078
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-12484
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14023
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14102
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-8772
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-8773
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5525
- 2 reactions found over 5 reactions in the full pathway
- PWY3DJ-35471
- 3 reactions found over 6 reactions in the full pathway
- PWY-6307
- 4 reactions found over 4 reactions in the full pathway
- PWY-6693
- 1 reactions found over 3 reactions in the full pathway
- PWY-7178
- 1 reactions found over 4 reactions in the full pathway
- PWY-5515
- 2 reactions found over 3 reactions in the full pathway
- PWY-5516
- 1 reactions found over 1 reactions in the full pathway