Difference between revisions of "SJ05836"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15837 CPD-15837] == * common-name: ** β-tocotrienol * smiles: ** cc(=cccc(=cccc(=cccc1...")
(Created page with "Category:gene == Gene SJ05836 == * transcription-direction: ** negative * right-end-position: ** 83884 * left-end-position: ** 63205 * centisome-position: ** 13.002308...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-15837 CPD-15837] ==
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== Gene SJ05836 ==
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* common-name:
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* transcription-direction:
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** β-tocotrienol
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** negative
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* smiles:
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* right-end-position:
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** cc(=cccc(=cccc(=cccc1(c)(oc2(c(cc1)=c(c(=cc=2c)o)c)))c)c)c
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** 83884
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* inchi-key:
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* left-end-position:
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** fgykufvnyvmtam-wazjvijmsa-n
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** 63205
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* molecular-weight:
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* centisome-position:
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** 410.639
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** 13.002308   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to produce the compound ==
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-14919]]
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=&beta;-tocotrienol}}
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* [[3.1.3.57-RXN]]
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{{#set: inchi-key=inchikey=fgykufvnyvmtam-wazjvijmsa-n}}
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** Category: [[annotation]]
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{{#set: molecular-weight=410.639}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[325-BISPHOSPHATE-NUCLEOTIDASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[4-NITROPHENYLPHOSPHATASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[NUCLEOTIDASE-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[R163-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10939]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-14473]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-17947]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-17948]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-7253]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-5408]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-6363]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-2301]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-4702]]
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** '''3''' reactions found over '''14''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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{{#set: right-end-position=83884}}
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{{#set: left-end-position=63205}}
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{{#set: centisome-position=13.002308    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=12}}
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{{#set: nb pathway associated=3}}

Latest revision as of 11:04, 18 March 2021

Gene SJ05836

  • transcription-direction:
    • negative
  • right-end-position:
    • 83884
  • left-end-position:
    • 63205
  • centisome-position:
    • 13.002308

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6363
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-2301
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4702
    • 3 reactions found over 14 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05836&oldid=133244"