Difference between revisions of "SJ05897"

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(Created page with "Category:gene == Gene SJ04827 == * transcription-direction: ** negative * right-end-position: ** 88004 * left-end-position: ** 66024 * centisome-position: ** 66.407166...")
(Created page with "Category:gene == Gene SJ04229 == * transcription-direction: ** positive * right-end-position: ** 194660 * left-end-position: ** 187785 * centisome-position: ** 36.380455...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04827 ==
+
== Gene SJ04229 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 88004
+
** 194660
 
* left-end-position:
 
* left-end-position:
−
** 66024
+
** 187785
 
* centisome-position:
 
* centisome-position:
−
** 66.407166    
+
** 36.380455    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[5.99.1.2-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[3-OXOACYL-ACP-REDUCT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DHBDEHYD-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
* [[GLUCONATE-5-DEHYDROGENASE-RXN]]
−
{{#set: right-end-position=88004}}
+
** Category: [[annotation]]
−
{{#set: left-end-position=66024}}
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: centisome-position=66.407166   }}
+
* [[RIBITOL-2-DEHYDROGENASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10060]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10655]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10659]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11476]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11480]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16616]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16622]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16626]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16630]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9540]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9552]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9556]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9633]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2142]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-157]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-349]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-469]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-508]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FASYN-ELONG-PWY]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5901]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[IDNCAT-PWY]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[RIBITOLUTIL-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6113]]
 +
** '''8''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
 +
** '''26''' reactions found over '''205''' reactions in the full pathway
 +
* [[PWY-6282]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7664]]
 +
** '''13''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7663]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5971]]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7388]]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5367]]
 +
** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5973]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5989]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=194660}}
 +
{{#set: left-end-position=187785}}
 +
{{#set: centisome-position=36.380455   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=29}}
 +
{{#set: nb pathway associated=19}}

Revision as of 08:22, 15 March 2021

Gene SJ04229

  • transcription-direction:
    • positive
  • right-end-position:
    • 194660
  • left-end-position:
    • 187785
  • centisome-position:
    • 36.380455

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-5901
    • 2 reactions found over 3 reactions in the full pathway
  • IDNCAT-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • RIBITOLUTIL-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6113
    • 8 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 26 reactions found over 205 reactions in the full pathway
  • PWY-6282
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5973
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5989
    • 6 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 4 reactions found over 6 reactions in the full pathway




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