Difference between revisions of "SJ05897"

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(Created page with "Category:gene == Gene SJ04229 == * transcription-direction: ** positive * right-end-position: ** 194660 * left-end-position: ** 187785 * centisome-position: ** 36.380455...")
(Created page with "Category:gene == Gene SJ05897 == * transcription-direction: ** negative * right-end-position: ** 106440 * left-end-position: ** 94154 * centisome-position: ** 19.4297...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
== Gene SJ04229 ==
+
== Gene SJ05897 ==
 
* transcription-direction:
 
* transcription-direction:
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
** 194660
+
** 106440
 
* left-end-position:
 
* left-end-position:
** 187785
+
** 94154
 
* centisome-position:
 
* centisome-position:
** 36.380455    
+
** 19.4297    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* [[3-OXOACYL-ACP-REDUCT-RXN]]
+
* [[ALDHDEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[DHBDEHYD-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
* [[GLUCONATE-5-DEHYDROGENASE-RXN]]
+
* [[BADH-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[R222-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10089]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RIBITOL-2-DEHYDROGENASE-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
* [[RXN-10060]]
+
* [[RXN-10715]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-10655]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10780]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-10659]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10912]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-11476]]
+
* [[RXN-10917]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-11480]]
+
* [[RXN-14209]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14224]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-13008]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14225]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-16616]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14280]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-16622]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16653]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-16626]]
+
* [[RXN-16654]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-16630]]
+
* [[RXN-16655]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-9514]]
+
* [[RXN-16656]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-9518]]
+
* [[RXN-17808]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-9524]]
+
* [[RXN-3443]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
** Category: [[orthology]]
+
* [[RXN-37]]
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
* [[RXN-9528]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
* [[RXN-9532]]
+
* [[RXN-4142]]
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
* [[RXN-9536]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-6382]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-8014]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
* [[RXN-9540]]
+
* [[RXN-9758]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-9552]]
+
* [[RXN0-5293]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-9556]]
+
* [[RXN66-3]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN-9633]]
+
* [[RXN66-472]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN0-2142]]
+
* [[RXN66-476]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN1G-157]]
+
* [[RXN66-479]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN1G-349]]
+
* [[RXN6666-5]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN1G-469]]
+
* [[SSNOm]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
* [[RXN1G-508]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[SUCCSEMIALDDEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 109: Line 130:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
* [[FASYN-ELONG-PWY]]
+
* [[PWY-7269]]
 
** '''5''' reactions found over '''5''' reactions in the full pathway
 
** '''5''' reactions found over '''5''' reactions in the full pathway
* [[PWY-5901]]
+
* [[PWY1F-353]]
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
* [[IDNCAT-PWY]]
+
* [[BETSYN-PWY]]
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
* [[RIBITOLUTIL-PWY]]
+
* [[CHOLINE-BETAINE-ANA-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3722]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7494]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
* [[PWY-6113]]
+
* [[P221-PWY]]
** '''8''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''5''' reactions in the full pathway
* [[PWYG-321]]
+
* [[PWY-6181]]
** '''26''' reactions found over '''205''' reactions in the full pathway
+
** '''1''' reactions found over '''3''' reactions in the full pathway
* [[PWY-6282]]
+
* [[PWY-6307]]
** '''8''' reactions found over '''9''' reactions in the full pathway
 
* [[PWY-6519]]
 
** '''9''' reactions found over '''11''' reactions in the full pathway
 
* [[PWY-7664]]
 
** '''13''' reactions found over '''14''' reactions in the full pathway
 
* [[PWY-7663]]
 
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
* [[PWY-5971]]
+
* [[PWY-6313]]
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
* [[PWY-5994]]
+
* [[PWY-6342]]
** '''31''' reactions found over '''31''' reactions in the full pathway
+
** '''8''' reactions found over '''13''' reactions in the full pathway
* [[PWY-7388]]
+
* [[PWY-2221]]
** '''7''' reactions found over '''11''' reactions in the full pathway
+
** '''6''' reactions found over '''9''' reactions in the full pathway
* [[PWY-5367]]
+
* [[PWY-0]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-2724]]
 
** '''2''' reactions found over '''6''' reactions in the full pathway
 
** '''2''' reactions found over '''6''' reactions in the full pathway
* [[PWY-5973]]
+
* [[PWY-2501]]
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
* [[PWY-5989]]
+
* [[PWY-3981]]
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
* [[PWY3O-355]]
+
* [[PWY-5760]]
** '''6''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
* [[PWY0-862]]
+
* [[PWY-5168]]
** '''5''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''4''' reactions in the full pathway
* [[PWY-7858]]
+
* [[PWY-6054]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6055]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6536]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7387]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-21]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-162]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-161]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-387]]
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY66-388]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-389]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY6666-2]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7431]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[GLUDEG-I-PWY]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6473]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6535]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4321]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6537]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[P105-PWY]]
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6993]]
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[P181-PWY]]
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 
</div>
 
</div>
{{#set: transcription-direction=positive}}
+
{{#set: transcription-direction=negative}}
{{#set: right-end-position=194660}}
+
{{#set: right-end-position=106440}}
{{#set: left-end-position=187785}}
+
{{#set: left-end-position=94154}}
{{#set: centisome-position=36.380455   }}
+
{{#set: centisome-position=19.4297   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
{{#set: nb reaction associated=29}}
+
{{#set: nb reaction associated=32}}
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=39}}

Latest revision as of 11:10, 18 March 2021

Gene SJ05897

  • transcription-direction:
    • negative
  • right-end-position:
    • 106440
  • left-end-position:
    • 94154
  • centisome-position:
    • 19.4297

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7269
    • 5 reactions found over 5 reactions in the full pathway
  • PWY1F-353
    • 1 reactions found over 3 reactions in the full pathway
  • BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7494
    • 1 reactions found over 2 reactions in the full pathway
  • P221-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6181
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6307
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6313
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6342
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-0
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-2724
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-2501
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-3981
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5760
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5168
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6054
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6055
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6536
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7387
    • 1 reactions found over 3 reactions in the full pathway
  • PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-162
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-387
    • 4 reactions found over 6 reactions in the full pathway
  • PWY66-388
    • 2 reactions found over 7 reactions in the full pathway
  • PWY66-389
    • 4 reactions found over 4 reactions in the full pathway
  • PWY6666-2
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7431
    • 3 reactions found over 8 reactions in the full pathway
  • GLUDEG-I-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6473
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6535
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6537
    • 2 reactions found over 2 reactions in the full pathway
  • P105-PWY
    • 10 reactions found over 9 reactions in the full pathway
  • PWY-6993
    • 1 reactions found over 11 reactions in the full pathway
  • P181-PWY
    • 2 reactions found over 17 reactions in the full pathway
  • 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY
    • 2 reactions found over 8 reactions in the full pathway