Difference between revisions of "SJ05897"

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(Created page with "Category:gene == Gene SJ22309 == * transcription-direction: ** negative * right-end-position: ** 124699 * left-end-position: ** 93045 * centisome-position: ** 52.177204...")
(Created page with "Category:gene == Gene SJ05897 == * transcription-direction: ** negative * right-end-position: ** 106440 * left-end-position: ** 94154 * centisome-position: ** 19.4297...")
 
(4 intermediate revisions by 2 users not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ22309 ==
+
== Gene SJ05897 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 124699
+
** 106440
 
* left-end-position:
 
* left-end-position:
−
** 93045
+
** 94154
 
* centisome-position:
 
* centisome-position:
−
** 52.177204    
+
** 19.4297    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RXN-13398]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ALDHDEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-17252]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[BADH-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[R222-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7676]]
+
* [[RXN-10089]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7677]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10715]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-7740]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10780]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10912]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10917]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14209]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14224]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14225]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14280]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-16653]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16654]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16655]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16656]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-17808]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-3443]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-37]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-4142]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-6382]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-8014]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-9758]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-5293]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-3]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-472]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-476]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN66-479]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN6666-5]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[SSNOm]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[SUCCINATE-SEMIALDEHYDE-DEHYDROGENASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[SUCCSEMIALDDEHYDROG-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6927]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
* [[PWY-7269]]
−
* [[PWY-5098]]
+
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY1F-353]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[BETSYN-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[CHOLINE-BETAINE-ANA-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3722]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7494]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[P221-PWY]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6181]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6307]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6313]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6342]]
 +
** '''8''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-2221]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-0]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-2724]]
 
** '''2''' reactions found over '''6''' reactions in the full pathway
 
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5068]]
+
* [[PWY-2501]]
−
** '''4''' reactions found over '''7''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-3981]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5760]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5168]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6054]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6055]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6536]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7387]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-21]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-162]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-161]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY66-387]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY66-388]]
 +
** '''2''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-389]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY6666-2]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7431]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[GLUDEG-I-PWY]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6473]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-6535]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-4321]]
 +
** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6537]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[P105-PWY]]
 +
** '''10''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6993]]
 +
** '''1''' reactions found over '''11''' reactions in the full pathway
 +
* [[P181-PWY]]
 +
** '''2''' reactions found over '''17''' reactions in the full pathway
 +
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
 +
** '''2''' reactions found over '''8''' reactions in the full pathway
 +
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=124699}}
+
{{#set: right-end-position=106440}}
−
{{#set: left-end-position=93045}}
+
{{#set: left-end-position=94154}}
−
{{#set: centisome-position=52.177204   }}
+
{{#set: centisome-position=19.4297   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=32}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=39}}

Latest revision as of 11:10, 18 March 2021

Gene SJ05897

  • transcription-direction:
    • negative
  • right-end-position:
    • 106440
  • left-end-position:
    • 94154
  • centisome-position:
    • 19.4297

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7269
    • 5 reactions found over 5 reactions in the full pathway
  • PWY1F-353
    • 1 reactions found over 3 reactions in the full pathway
  • BETSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • CHOLINE-BETAINE-ANA-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-3722
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7494
    • 1 reactions found over 2 reactions in the full pathway
  • P221-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6181
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6307
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6313
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-6342
    • 8 reactions found over 13 reactions in the full pathway
  • PWY-2221
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-0
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-2724
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-2501
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-3981
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5760
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5168
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6054
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6055
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6536
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7387
    • 1 reactions found over 3 reactions in the full pathway
  • PWY66-21
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-162
    • 3 reactions found over 3 reactions in the full pathway
  • PWY66-161
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-387
    • 4 reactions found over 6 reactions in the full pathway
  • PWY66-388
    • 2 reactions found over 7 reactions in the full pathway
  • PWY66-389
    • 4 reactions found over 4 reactions in the full pathway
  • PWY6666-2
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-7431
    • 3 reactions found over 8 reactions in the full pathway
  • GLUDEG-I-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6473
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6535
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-4321
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6537
    • 2 reactions found over 2 reactions in the full pathway
  • P105-PWY
    • 10 reactions found over 9 reactions in the full pathway
  • PWY-6993
    • 1 reactions found over 11 reactions in the full pathway
  • P181-PWY
    • 2 reactions found over 17 reactions in the full pathway
  • 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY
    • 2 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05897&oldid=136201"