Difference between revisions of "SJ05905"

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(Created page with "Category:gene == Gene SJ00669 == * transcription-direction: ** negative * right-end-position: ** 154563 * left-end-position: ** 148234 * centisome-position: ** 90.49915...")
(Created page with "Category:gene == Gene SJ17686 == * transcription-direction: ** positive * right-end-position: ** 45258 * left-end-position: ** 43394 * centisome-position: ** 16.85086...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00669 ==
+
== Gene SJ17686 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 154563
+
** 45258
 
* left-end-position:
 
* left-end-position:
−
** 148234
+
** 43394
 
* centisome-position:
 
* centisome-position:
−
** 90.49915    
+
** 16.85086    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ATPASE-RXN]]
−
* [[ENTDB-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[HOLO-ACP-SYNTH-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-12195]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10994]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-12196]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-15889]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN0-5462]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-16759]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[ENTBACSYN-PWY]]
+
* [[PWY-7210]]
−
** '''3''' reactions found over '''8''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-6012]]
+
* [[PWY-7198]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''6''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6012-1]]
+
* [[PWY-7184]]
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
{{#set: transcription-direction=negative}}
+
* [[PWY-6545]]
−
{{#set: right-end-position=154563}}
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
{{#set: left-end-position=148234}}
+
{{#set: transcription-direction=positive}}
−
{{#set: centisome-position=90.49915   }}
+
{{#set: right-end-position=45258}}
−
{{#set: organism associated=S.japonica_sterols_curated}}
+
{{#set: left-end-position=43394}}
 +
{{#set: centisome-position=16.85086   }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: nb reaction associated=5}}
 
{{#set: nb reaction associated=5}}
−
{{#set: nb pathway associated=3}}
+
{{#set: nb pathway associated=4}}

Revision as of 14:49, 5 January 2021

Gene SJ17686

  • transcription-direction:
    • positive
  • right-end-position:
    • 45258
  • left-end-position:
    • 43394
  • centisome-position:
    • 16.85086

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05905&oldid=56705"