Difference between revisions of "SJ05989"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12258 CPD-12258] == * common-name: ** udp-n-acetyl-α-d-muramoyl-l-alanyl-γ-d-gl...")
(Created page with "Category:gene == Gene SJ20943 == * transcription-direction: ** positive * right-end-position: ** 198154 * left-end-position: ** 193169 * centisome-position: ** 95.61023...")
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12258 CPD-12258] ==
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== Gene SJ20943 ==
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* common-name:
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* transcription-direction:
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** udp-n-acetyl-α-d-muramoyl-l-alanyl-γ-d-glutamyl-l-lysyl-d-alanine
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** positive
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* smiles:
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* right-end-position:
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** cc(c(=o)nc(c(=o)[o-])ccc(=o)nc(cccc[n+])c(nc(c)c(=o)[o-])=o)nc(=o)c(c)oc1(c(o)c(co)oc(c(nc(=o)c)1)op(op(occ2(oc(c(o)c(o)2)n3(c=cc(=o)nc(=o)3)))([o-])=o)([o-])=o)
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** 198154
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* inchi-key:
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* left-end-position:
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** foedsvrzgqixsp-xsoiktqosa-k
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** 193169
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* molecular-weight:
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* centisome-position:
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** 1075.843
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** 95.61023   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-11347]]
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* [[S.japonica_sterols_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=udp-n-acetyl-&alpha;-d-muramoyl-l-alanyl-&gamma;-d-glutamyl-l-lysyl-d-alanine}}
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* [[2.6.1.57-RXN]]
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{{#set: inchi-key=inchikey=foedsvrzgqixsp-xsoiktqosa-k}}
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** Category: [[annotation]]
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{{#set: molecular-weight=1075.843}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ASPAMINOTRANS-RXN]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[HISTAMINOTRANS-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[PHEAMINOTRANS-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10814]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11737]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13697]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14147]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
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** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[ASPARAGINE-DEG1-PWY-1]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ASPARTATESYN-PWY]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUTDEG-PWY]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5913]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7383]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7117]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-7115]]
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** '''9''' reactions found over '''10''' reactions in the full pathway
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* [[ASPARTATE-DEG1-PWY]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[HISTSYN-PWY]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[ANAPHENOXI-PWY]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PHESYN]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7432]]
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** '''3''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5079]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6318]]
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** '''4''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6638]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6642]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6643]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-3581]]
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** '''6''' reactions found over '''11''' reactions in the full pathway
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* [[PWY3O-4108]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5048]]
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** '''1''' reactions found over '''10''' reactions in the full pathway
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* [[TYRFUMCAT-PWY]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7514]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5886]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-7518]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[TYRSYN]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-5754]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5151]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=198154}}
 +
{{#set: left-end-position=193169}}
 +
{{#set: centisome-position=95.61023    }}
 +
{{#set: organism associated=S.japonica_sterols_curated}}
 +
{{#set: nb reaction associated=9}}
 +
{{#set: nb pathway associated=28}}

Revision as of 20:19, 18 December 2020

Gene SJ20943

  • transcription-direction:
    • positive
  • right-end-position:
    • 198154
  • left-end-position:
    • 193169
  • centisome-position:
    • 95.61023

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ASPARAGINE-DEG1-PWY-1
    • 3 reactions found over 3 reactions in the full pathway
  • ASPARTATESYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 10 reactions in the full pathway
  • ASPARTATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • MALATE-ASPARTATE-SHUTTLE-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • HISTSYN-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • ANAPHENOXI-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PHESYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5079
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-6318
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-6638
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6642
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-6643
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-3581
    • 6 reactions found over 11 reactions in the full pathway
  • PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5048
    • 1 reactions found over 10 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5754
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5151
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05989&oldid=40479"