Difference between revisions of "SJ05994"

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(Created page with "Category:gene == Gene SJ00045 == * transcription-direction: ** positive * right-end-position: ** 706887 * left-end-position: ** 685451 * centisome-position: ** 46.659313...")
(Created page with "Category:gene == Gene SJ11912 == * transcription-direction: ** negative * right-end-position: ** 374061 * left-end-position: ** 366557 * centisome-position: ** 47.40086...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ00045 ==
+
== Gene SJ11912 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 706887
+
** 374061
 
* left-end-position:
 
* left-end-position:
−
** 685451
+
** 366557
 
* centisome-position:
 
* centisome-position:
−
** 46.659313    
+
** 47.40086    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[6PGLUCONDEHYDROG-RXN]]
−
* [[CHORISMATEMUT-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PPDH]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
* [[PREPHENATE-DEHYDROGENASE-NADP+-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[PREPHENATEDEHYDRAT-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[PREPHENATEDEHYDROG-RXN]]
+
* [[RXN-3341]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-5682]]
+
* [[RXN-9952]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-3461]]
+
* [[P122-PWY]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''16''' reactions found over '''18''' reactions in the full pathway
−
* [[PWY-6120]]
+
* [[RUMP-PWY]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PHESYN]]
+
* [[OXIDATIVEPENT-PWY]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7626]]
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-3462]]
 
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[TYRSYN]]
 
 
** '''3''' reactions found over '''3''' reactions in the full pathway
 
** '''3''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-6627]]
+
{{#set: transcription-direction=negative}}
−
** '''3''' reactions found over '''15''' reactions in the full pathway
+
{{#set: right-end-position=374061}}
−
* [[PWY-7432]]
+
{{#set: left-end-position=366557}}
−
** '''3''' reactions found over '''2''' reactions in the full pathway
+
{{#set: centisome-position=47.40086   }}
−
* [[PWY-7303]]
 
−
** '''1''' reactions found over '''4''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=706887}}
 
−
{{#set: left-end-position=685451}}
 
−
{{#set: centisome-position=46.659313   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=9}}
+
{{#set: nb pathway associated=3}}

Revision as of 15:15, 5 January 2021

Gene SJ11912

  • transcription-direction:
    • negative
  • right-end-position:
    • 374061
  • left-end-position:
    • 366557
  • centisome-position:
    • 47.40086

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • P122-PWY
    • 16 reactions found over 18 reactions in the full pathway
  • RUMP-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • OXIDATIVEPENT-PWY
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ05994&oldid=66596"