Difference between revisions of "SJ06016"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:gene == Gene SJ03199 == * transcription-direction: ** positive * right-end-position: ** 62481 * left-end-position: ** 39163 * centisome-position: ** 31.588667...")
(Created page with "Category:gene == Gene SJ00173 == * transcription-direction: ** negative * right-end-position: ** 60261 * left-end-position: ** 46978 * centisome-position: ** 27.521765...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ03199 ==
+
== Gene SJ00173 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 62481
+
** 60261
 
* left-end-position:
 
* left-end-position:
−
** 39163
+
** 46978
 
* centisome-position:
 
* centisome-position:
−
** 31.588667    
+
** 27.521765    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
−
* [[S.japonica_sterols_curated]]
+
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[THREONINE--TRNA-LIGASE-RXN]]
+
* [[FPPS]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[FPPSYN-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[GPPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
Line 18: Line 27:
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[TRNA-CHARGING-PWY]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''21''' reactions found over '''21''' reactions in the full pathway
+
* [[PWY-6859]]
−
{{#set: transcription-direction=positive}}
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
{{#set: right-end-position=62481}}
+
* [[PWY-7736]]
−
{{#set: left-end-position=39163}}
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
{{#set: centisome-position=31.588667   }}
+
* [[PWY-7102]]
−
{{#set: organism associated=S.japonica_sterols_curated}}
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
{{#set: nb reaction associated=1}}
+
* [[PWY-7721]]
−
{{#set: nb pathway associated=1}}
+
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6383]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7410]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5122]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7141]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7659]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7709]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7182]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=60261}}
 +
{{#set: left-end-position=46978}}
 +
{{#set: centisome-position=27.521765   }}
 +
{{#set: organism associated=S.japonica_carotenoid_curated}}
 +
{{#set: nb reaction associated=3}}
 +
{{#set: nb pathway associated=12}}

Revision as of 14:45, 5 January 2021

Gene SJ00173

  • transcription-direction:
    • negative
  • right-end-position:
    • 60261
  • left-end-position:
    • 46978
  • centisome-position:
    • 27.521765

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06016&oldid=54279"