Difference between revisions of "SJ06329"

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(Created page with "Category:gene == Gene SJ10647 == * transcription-direction: ** positive * right-end-position: ** 295901 * left-end-position: ** 275128 * centisome-position: ** 71.14379...")
(Created page with "Category:gene == Gene SJ09945 == * transcription-direction: ** positive * right-end-position: ** 244797 * left-end-position: ** 217669 * centisome-position: ** 54.161472...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ10647 ==
+
== Gene SJ09945 ==
 
* transcription-direction:
 
* transcription-direction:
 
** positive
 
** positive
 
* right-end-position:
 
* right-end-position:
−
** 295901
+
** 244797
 
* left-end-position:
 
* left-end-position:
−
** 275128
+
** 217669
 
* centisome-position:
 
* centisome-position:
−
** 71.14379    
+
** 54.161472    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[1-ACYLGLYCEROL-3-P-ACYLTRANSFER-RXN]]
+
* [[2.5.1.41-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[CYCLOARTENOL-SYNTHASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-15043]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-16025]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
+
* [[FPPSYN-RXN]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** Category: [[orthology]]
−
* [[RXN-16032]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
+
* [[GPPSYN-RXN]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** Category: [[orthology]]
−
* [[RXN-16067]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
** Category: [[annotation]]
+
* [[LANOSTEROL-SYNTHASE-RXN]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16076]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16077]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16118]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-1623]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17008]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17009]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17010]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17011]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17012]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17013]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17014]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17015]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17019]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17020]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17021]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17022]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17023]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17024]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-17729]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5514]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-6705]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-7810]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7811]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-7813]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-5981]]
+
* [[PWY-6349]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY0-1319]]
+
* [[PWY-6115]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''n.a''' reactions in the full pathway
−
* [[PWY-7411]]
+
* [[PWY-7154]]
−
** '''4''' reactions found over '''5''' reactions in the full pathway
+
** '''2''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7417]]
+
* [[PWY-7155]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6098]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7589]]
+
* [[PWY-2541]]
 +
** '''11''' reactions found over '''35''' reactions in the full pathway
 +
* [[PWY-6109]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6859]]
 +
** '''3''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7736]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7102]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7721]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5123]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6383]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7410]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5122]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-7141]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7659]]
 +
** '''1''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7709]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7182]]
 
** '''1''' reactions found over '''2''' reactions in the full pathway
 
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-7587]]
+
* [[PWY-6132]]
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-6453]]
+
* [[PWY-5808]]
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[TRIGLSYN-PWY]]
+
* [[PWY-5132]]
−
** '''5''' reactions found over '''7''' reactions in the full pathway
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5667]]
+
* [[PWY-5133]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7782]]
 
−
** '''11''' reactions found over '''16''' reactions in the full pathway
 
 
</div>
 
</div>
 
{{#set: transcription-direction=positive}}
 
{{#set: transcription-direction=positive}}
−
{{#set: right-end-position=295901}}
+
{{#set: right-end-position=244797}}
−
{{#set: left-end-position=275128}}
+
{{#set: left-end-position=217669}}
−
{{#set: centisome-position=71.14379   }}
+
{{#set: centisome-position=54.161472   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=26}}
+
{{#set: nb reaction associated=8}}
−
{{#set: nb pathway associated=10}}
+
{{#set: nb pathway associated=23}}

Revision as of 09:25, 27 August 2019

Gene SJ09945

  • transcription-direction:
    • positive
  • right-end-position:
    • 244797
  • left-end-position:
    • 217669
  • centisome-position:
    • 54.161472

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6349
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-6115
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-7154
    • 2 reactions found over 11 reactions in the full pathway
  • PWY-7155
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6098
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-2541
    • 11 reactions found over 35 reactions in the full pathway
  • PWY-6109
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6859
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7736
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7102
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7721
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5123
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6383
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7410
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-5122
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-7141
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7659
    • 1 reactions found over 9 reactions in the full pathway
  • PWY-7709
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7182
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-6132
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-5808
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5132
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5133
    • 1 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06329&oldid=29423"