Difference between revisions of "SJ06408"
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(Created page with "Category:gene == Gene SJ20825 == * transcription-direction: ** positive * right-end-position: ** 95419 * left-end-position: ** 81181 * centisome-position: ** 40.01114...") |
(Created page with "Category:gene == Gene SJ06408 == * transcription-direction: ** negative * right-end-position: ** 440106 * left-end-position: ** 425895 * centisome-position: ** 89.4775...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ06408 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 440106 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 425895 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 89.4775 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[AIRS-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[FGFTh]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[FPGFTh]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[GART-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[GLYRIBONUCSYN-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[ | + | * [[PWY-6277]] |
| − | ** ''' | + | ** '''6''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: transcription-direction= | + | * [[PWY-6121]] |
| − | {{#set: right-end-position= | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
| − | {{#set: left-end-position= | + | * [[PWY-6122]] |
| − | {{#set: centisome-position= | + | ** '''4''' reactions found over '''5''' reactions in the full pathway |
| + | * [[PWY-6613]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=negative}} | ||
| + | {{#set: right-end-position=440106}} | ||
| + | {{#set: left-end-position=425895}} | ||
| + | {{#set: centisome-position=89.4775 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
Latest revision as of 11:07, 18 March 2021
Contents
Gene SJ06408
- transcription-direction:
- negative
- right-end-position:
- 440106
- left-end-position:
- 425895
- centisome-position:
- 89.4775
Organism(s) associated with this gene
Reaction(s) associated
- AIRS-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- FGFTh
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- FPGFTh
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- GART-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- GLYRIBONUCSYN-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6277
- 6 reactions found over 5 reactions in the full pathway
- PWY-6121
- 5 reactions found over 5 reactions in the full pathway
- PWY-6122
- 4 reactions found over 5 reactions in the full pathway
- PWY-6613
- 2 reactions found over 2 reactions in the full pathway
