Difference between revisions of "SJ06412"

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(Created page with "Category:gene == Gene SJ20699 == * transcription-direction: ** positive * right-end-position: ** 111074 * left-end-position: ** 97922 * centisome-position: ** 47.822113...")
(Created page with "Category:gene == Gene SJ06412 == * transcription-direction: ** negative * right-end-position: ** 475814 * left-end-position: ** 464910 * centisome-position: ** 97.67427...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ20699 ==
+
== Gene SJ06412 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 111074
+
** 475814
 
* left-end-position:
 
* left-end-position:
−
** 97922
+
** 464910
 
* centisome-position:
 
* centisome-position:
−
** 47.822113    
+
** 97.67427    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[BRANCHED-CHAINAMINOTRANSFERILEU-RXN]]
−
* [[3.6.3.1-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[3.6.3.44-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[BRANCHED-CHAINAMINOTRANSFERLEU-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[ATPASE-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[BRANCHED-CHAINAMINOTRANSFERVAL-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
== Pathway(s) associated ==
−
** Category: [[annotation]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[ILEUSYN-PWY]]
−
* [[RXN-12195]]
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[ILEUDEG-PWY]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[RXN-12196]]
+
* [[PWY-5078]]
−
** Category: [[annotation]]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PWY-5103]]
−
* [[RXN0-5462]]
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-5104]]
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''2''' reactions found over '''6''' reactions in the full pathway
−
* [[TRANS-RXN-311]]
+
* [[PWY-5101]]
−
** Category: [[annotation]]
+
** '''4''' reactions found over '''8''' reactions in the full pathway
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PWY-5108]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[LEU-DEG2-PWY]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5076]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7767]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[LEUSYN-PWY]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[VALSYN-PWY]]
 +
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[ALANINE-VALINESYN-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5057]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[VALDEG-PWY]]
 +
** '''6''' reactions found over '''8''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s) associated ==
+
{{#set: transcription-direction=negative}}
−
* [[PWY-7210]]
+
{{#set: right-end-position=475814}}
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
{{#set: left-end-position=464910}}
−
* [[PWY-7198]]
+
{{#set: centisome-position=97.67427   }}
−
** '''6''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-7184]]
 
−
** '''9''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6545]]
 
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=111074}}
 
−
{{#set: left-end-position=97922}}
 
−
{{#set: centisome-position=47.822113   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=8}}
+
{{#set: nb reaction associated=3}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=15}}

Latest revision as of 11:04, 18 March 2021

Gene SJ06412

  • transcription-direction:
    • negative
  • right-end-position:
    • 475814
  • left-end-position:
    • 464910
  • centisome-position:
    • 97.67427

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ILEUSYN-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • ILEUDEG-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5078
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5103
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-5104
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5101
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5108
    • 2 reactions found over 3 reactions in the full pathway
  • LEU-DEG2-PWY
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5076
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7767
    • 1 reactions found over 5 reactions in the full pathway
  • LEUSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway
  • VALSYN-PWY
    • 4 reactions found over 4 reactions in the full pathway
  • ALANINE-VALINESYN-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5057
    • 2 reactions found over 3 reactions in the full pathway
  • VALDEG-PWY
    • 6 reactions found over 8 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06412&oldid=133551"