Difference between revisions of "SJ06446"
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(Created page with "Category:gene == Gene SJ12431 == * transcription-direction: ** negative * right-end-position: ** 323433 * left-end-position: ** 304855 * centisome-position: ** 85.16407...") |
(Created page with "Category:gene == Gene SJ06446 == * transcription-direction: ** negative * right-end-position: ** 22392 * left-end-position: ** 12545 * centisome-position: ** 2.6382365...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ06446 == |
* transcription-direction: | * transcription-direction: | ||
** negative | ** negative | ||
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 22392 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 12545 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 2.6382365 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[RXN- | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[LTAA-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN-14146]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| − | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | * [[ | + | * [[RXN-9896]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[THREONINE-ALDOLASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY | + | * [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]] |
| − | ** '''2''' reactions found over ''' | + | ** '''2''' reactions found over '''8''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-6100]] |
| − | ** ''' | + | ** '''3''' reactions found over '''4''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-5436]] |
| − | ** '''1''' reactions found over ''' | + | ** '''1''' reactions found over '''2''' reactions in the full pathway |
| − | * [[ | + | * [[GLYSYN-THR-PWY]] |
| − | + | ** '''1''' reactions found over '''1''' reactions in the full pathway | |
| − | |||
| − | |||
| − | |||
| − | ** ''' | ||
{{#set: transcription-direction=negative}} | {{#set: transcription-direction=negative}} | ||
| − | {{#set: right-end-position= | + | {{#set: right-end-position=22392}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=12545}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=2.6382365 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=5}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=4}} |
Latest revision as of 11:08, 18 March 2021
Contents
Gene SJ06446
- transcription-direction:
- negative
- right-end-position:
- 22392
- left-end-position:
- 12545
- centisome-position:
- 2.6382365
Organism(s) associated with this gene
Reaction(s) associated
- 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- LTAA-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14146
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-9896
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- THREONINE-ALDOLASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- 3-HYDROXYPHENYLACETATE-DEGRADATION-PWY
- 2 reactions found over 8 reactions in the full pathway
- PWY-6100
- 3 reactions found over 4 reactions in the full pathway
- PWY-5436
- 1 reactions found over 2 reactions in the full pathway
- GLYSYN-THR-PWY
- 1 reactions found over 1 reactions in the full pathway
