Difference between revisions of "SJ06544"

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(Created page with "Category:gene == Gene SJ15468 == * transcription-direction: ** positive * right-end-position: ** 55097 * left-end-position: ** 52617 * centisome-position: ** 17.805489...")
(Created page with "Category:gene == Gene SJ06544 == * transcription-direction: ** negative * right-end-position: ** 134150 * left-end-position: ** 122799 * centisome-position: ** 25.96069...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ15468 ==
+
== Gene SJ06544 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 55097
+
** 134150
 
* left-end-position:
 
* left-end-position:
−
** 52617
+
** 122799
 
* centisome-position:
 
* centisome-position:
−
** 17.805489    
+
** 25.96069    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[AAL_LPAREN_fum_RPAREN_]]
−
* [[4.3.1.17-RXN]]
+
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[AIAL]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[AICARSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[5.1.1.18-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[AMPSYN-RXN]]
−
* [[AMINO-ACID-RACEMASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[DSERDEAM-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15125]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-15581]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN0-2381]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN0-2382]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[TRYPSYN-RXN]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6196]]
+
* [[PWY-6123]]
−
** '''2''' reactions found over '''1''' reactions in the full pathway
+
** '''4''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6455]]
+
* [[PWY-6124]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[SERDEG-PWY]]
+
* [[PWY-7234]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5497]]
+
* [[PWY-7219]]
−
** '''10''' reactions found over '''24''' reactions in the full pathway
+
** '''4''' reactions found over '''3''' reactions in the full pathway
−
* [[PWY-3661]]
+
{{#set: transcription-direction=negative}}
−
** '''3''' reactions found over '''7''' reactions in the full pathway
+
{{#set: right-end-position=134150}}
−
* [[PWY0-1535]]
+
{{#set: left-end-position=122799}}
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
{{#set: centisome-position=25.96069   }}
−
* [[TRPSYN-PWY]]
 
−
** '''6''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-6949]]
 
−
** '''1''' reactions found over '''6''' reactions in the full pathway
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=55097}}
 
−
{{#set: left-end-position=52617}}
 
−
{{#set: centisome-position=17.805489   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=9}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=8}}
+
{{#set: nb pathway associated=4}}

Latest revision as of 11:10, 18 March 2021

Gene SJ06544

  • transcription-direction:
    • negative
  • right-end-position:
    • 134150
  • left-end-position:
    • 122799
  • centisome-position:
    • 25.96069

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6123
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-6124
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7234
    • 3 reactions found over 6 reactions in the full pathway
  • PWY-7219
    • 4 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06544&oldid=136152"