Difference between revisions of "SJ06617"

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(Created page with "Category:gene == Gene SJ21800 == * transcription-direction: ** negative * right-end-position: ** 385720 * left-end-position: ** 347638 * centisome-position: ** 58.821697...")
(Created page with "Category:gene == Gene SJ06617 == * transcription-direction: ** negative * right-end-position: ** 72661 * left-end-position: ** 46167 * centisome-position: ** 9.774 ==...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ21800 ==
+
== Gene SJ06617 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 385720
+
** 72661
 
* left-end-position:
 
* left-end-position:
−
** 347638
+
** 46167
 
* centisome-position:
 
* centisome-position:
−
** 58.821697    
+
** 9.774    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[3.6.3.1-RXN]]
+
* [[2.3.1.41-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-HYDROXYDECANOYL-ACP-DEHYDR-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-REDUCT-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-SYNTH-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.2.1.58-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.2.1.59-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[4.2.1.61-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ACP-S-ACETYLTRANSFER-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[ENOYL-ACP-REDUCT-NADPH-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[FATTY-ACID-SYNTHASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[HYDROXYMETHYLGLUTARYL-COA-SYNTHASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[ATPASE-RXN]]
+
* [[MALONYL-COA-ACP-TRANSACYL-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10059]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10654]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10658]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11474]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11479]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-13008]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16615]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-16621]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16625]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16629]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9514]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9515]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9516]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9518]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9520]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9521]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9523]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9524]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9526]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9527]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9528]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9530]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9531]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9532]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9533]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9534]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9535]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9536]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9537]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9538]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9539]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9540]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9542]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9632]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9648]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9650]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9651]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9652]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9653]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9654]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9655]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-2141]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-368]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN1G-445]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12195]]
+
* [[RXN1G-460]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-12196]]
+
* [[RXN1G-499]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN0-5462]]
+
* [[RXN3O-1803]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-6545]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FASYN-ELONG-PWY]]
 +
** '''5''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7388]]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-5966]]
 +
** '''2''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-5965]]
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]]
 +
** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5971]]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5994]]
 +
** '''31''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7391]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7524]]
 +
** '''5''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-922]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6174]]
 +
** '''6''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY66-367]]
 +
** '''4''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7571]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-4381]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6799]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-6113]]
 +
** '''8''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWYG-321]]
 +
** '''26''' reactions found over '''205''' reactions in the full pathway
 +
* [[PWY-6282]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-7210]]
+
* [[PWY-6519]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''9''' reactions found over '''11''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[PWY-7664]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''13''' reactions found over '''14''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[PWY-7663]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5989]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''5''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''6''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=385720}}
+
{{#set: right-end-position=72661}}
−
{{#set: left-end-position=347638}}
+
{{#set: left-end-position=46167}}
−
{{#set: centisome-position=58.821697   }}
+
{{#set: centisome-position=9.774   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=6}}
+
{{#set: nb reaction associated=60}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=25}}

Latest revision as of 11:07, 18 March 2021

Gene SJ06617

  • transcription-direction:
    • negative
  • right-end-position:
    • 72661
  • left-end-position:
    • 46167
  • centisome-position:
    • 9.774

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FASYN-ELONG-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over n.a reactions in the full pathway
  • PWY-5965
    • 1 reactions found over n.a reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-7391
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-7524
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-922
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-6174
    • 6 reactions found over 7 reactions in the full pathway
  • PWY66-367
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-7571
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-4381
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6799
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6113
    • 8 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 26 reactions found over 205 reactions in the full pathway
  • PWY-6282
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5989
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06617&oldid=135134"