Difference between revisions of "SJ06627"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12902 CPD-12902] == * common-name: ** 5-methylhex-4-enoyl-coa * smiles: ** cc(c)=cccc(=o)sc...")
(Created page with "Category:gene == Gene SJ15984 == * transcription-direction: ** positive * right-end-position: ** 196594 * left-end-position: ** 186579 * centisome-position: ** 64.68263...")
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-12902 CPD-12902] ==
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== Gene SJ15984 ==
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* common-name:
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* transcription-direction:
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** 5-methylhex-4-enoyl-coa
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** positive
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* smiles:
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* right-end-position:
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** cc(c)=cccc(=o)sccnc(=o)ccnc(=o)c(o)c(c)(c)cop(=o)(op(=o)(occ1(c(op([o-])(=o)[o-])c(o)c(o1)n3(c2(=c(c(n)=nc=n2)n=c3))))[o-])[o-]
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** 196594
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* inchi-key:
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* left-end-position:
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** beyylhumfmwplh-svhodsnwsa-j
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** 186579
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* molecular-weight:
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* centisome-position:
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** 873.658
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** 64.68263   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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== Reaction(s) known to produce the compound ==
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* [[S.japonica_sterols_curated]]
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* [[RXN-11917]]
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== Reaction(s) associated ==
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== Reaction(s) of unknown directionality ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=5-methylhex-4-enoyl-coa}}
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* [[2.3.1.179-RXN]]
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{{#set: inchi-key=inchikey=beyylhumfmwplh-svhodsnwsa-j}}
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** Category: [[annotation]]
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{{#set: molecular-weight=873.658}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[2.3.1.41-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[3-OXOACYL-ACP-SYNTH-RXN]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10059]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10654]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-10658]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-11474]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-11479]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16615]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16621]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16625]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-16629]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-8391]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9516]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9523]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9527]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9531]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9535]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9539]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9632]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9648]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9650]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9651]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9652]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9653]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN-9654]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN0-2141]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN1G-368]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN1G-445]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN1G-460]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN1G-499]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[RXN3O-1803]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5973]]
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** '''4''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-5966]]
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** '''2''' reactions found over '''n.a''' reactions in the full pathway
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* [[PWY-5965]]
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** '''1''' reactions found over '''n.a''' reactions in the full pathway
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* [[FASYN-INITIAL-PWY]]
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** '''5''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7388]]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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* [[FASYN-ELONG-PWY]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-6113]]
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** '''8''' reactions found over '''4''' reactions in the full pathway
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* [[PWYG-321]]
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** '''26''' reactions found over '''182''' reactions in the full pathway
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* [[PWY-6282]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6519]]
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** '''9''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7664]]
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** '''13''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7663]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5367]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5971]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY-5989]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5994]]
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** '''31''' reactions found over '''31''' reactions in the full pathway
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* [[PWY0-862]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7858]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY3O-355]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=196594}}
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{{#set: left-end-position=186579}}
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{{#set: centisome-position=64.68263    }}
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{{#set: organism associated=S.japonica_sterols_curated}}
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{{#set: nb reaction associated=33}}
 +
{{#set: nb pathway associated=19}}

Revision as of 20:23, 18 December 2020

Gene SJ15984

  • transcription-direction:
    • positive
  • right-end-position:
    • 196594
  • left-end-position:
    • 186579
  • centisome-position:
    • 64.68263

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5973
    • 4 reactions found over 5 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over n.a reactions in the full pathway
  • PWY-5965
    • 1 reactions found over n.a reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • FASYN-ELONG-PWY
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 8 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 26 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 9 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 13 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5971
    • 31 reactions found over 31 reactions in the full pathway
  • PWY-5989
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5994
    • 31 reactions found over 31 reactions in the full pathway
  • PWY0-862
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-7858
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 6 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06627&oldid=42386"