Difference between revisions of "SJ06720"

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(Created page with "Category:gene == Gene SJ13293 == * transcription-direction: ** positive * right-end-position: ** 248449 * left-end-position: ** 227171 * centisome-position: ** 66.225395...")
(Created page with "Category:gene == Gene SJ12906 == * transcription-direction: ** negative * right-end-position: ** 14433 * left-end-position: ** 8512 * centisome-position: ** 58.453506...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ13293 ==
+
== Gene SJ12906 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 248449
+
** 14433
 
* left-end-position:
 
* left-end-position:
−
** 227171
+
** 8512
 
* centisome-position:
 
* centisome-position:
−
** 66.225395    
+
** 58.453506    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[ATPASE-RXN]]
+
* [[ARGINASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[RXN-34]]
−
* [[RXN-12195]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-12196]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN0-5462]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7210]]
+
* [[PWY-6922]]
−
** '''8''' reactions found over '''8''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7198]]
+
* [[PWY-4984]]
−
** '''6''' reactions found over '''7''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7184]]
+
* [[ARG-GLU-PWY]]
−
** '''9''' reactions found over '''9''' reactions in the full pathway
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
* [[PWY-6545]]
+
* [[PWY-6305]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''4''' reactions found over '''n.a''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[ARG-PRO-PWY]]
−
{{#set: right-end-position=248449}}
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
{{#set: left-end-position=227171}}
+
* [[ARGASEDEG-PWY]]
−
{{#set: centisome-position=66.225395   }}
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[CITRULBIO-PWY]]
 +
** '''7''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-31]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=14433}}
 +
{{#set: left-end-position=8512}}
 +
{{#set: centisome-position=58.453506   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=8}}

Revision as of 18:44, 14 January 2021

Gene SJ12906

  • transcription-direction:
    • negative
  • right-end-position:
    • 14433
  • left-end-position:
    • 8512
  • centisome-position:
    • 58.453506

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6922
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • ARG-GLU-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6305
    • 4 reactions found over n.a reactions in the full pathway
  • ARG-PRO-PWY
    • 3 reactions found over 4 reactions in the full pathway
  • ARGASEDEG-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • CITRULBIO-PWY
    • 7 reactions found over 8 reactions in the full pathway
  • PWY-31
    • 1 reactions found over 2 reactions in the full pathway




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