Difference between revisions of "SJ06726"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7524 CPD-7524] == * common-name: ** 7,9,9'-cis-neurosporene * smiles: ** cc(=cccc(=cc=cc(c)...")
(Created page with "Category:gene == Gene SJ06726 == * transcription-direction: ** positive * right-end-position: ** 121372 * left-end-position: ** 57078 * centisome-position: ** 12.09295...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-7524 CPD-7524] ==
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== Gene SJ06726 ==
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* common-name:
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* transcription-direction:
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** 7,9,9'-cis-neurosporene
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** positive
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* smiles:
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* right-end-position:
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** cc(=cccc(=cc=cc(c)=cc=cc(=cc=cc=c(c=cc=c(c)ccc=c(ccc=c(c)c)c)c)c)c)c
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** 121372
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* inchi-key:
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* left-end-position:
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** atcicvfrsjqydv-ifjqppewsa-n
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** 57078
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* molecular-weight:
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* centisome-position:
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** 538.898
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** 12.09295   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[RXN-11357]]
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* [[S.japonica_carotenoid_curated]]
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== Reaction(s) known to produce the compound ==
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== Reaction(s) associated ==
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* [[RXN-11356]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Reaction(s) of unknown directionality ==
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* [[ACETYL-COA-CARBOXYLTRANSFER-RXN]]
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{{#set: common-name=7,9,9'-cis-neurosporene}}
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** Category: [[annotation]]
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{{#set: inchi-key=inchikey=atcicvfrsjqydv-ifjqppewsa-n}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: molecular-weight=538.898}}
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[ACOACXr]]
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** Category: [[orthology]]
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*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
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* [[BIOTIN-CARBOXYL-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[DALADALALIG-RXN]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5055]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7388]]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6679]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-1264]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5744]]
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** '''4''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5743]]
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** '''5''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5789]]
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** '''8''' reactions found over '''18''' reactions in the full pathway
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* [[PWY-7953]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6386]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6387]]
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** '''2''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-6722]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-4381]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=121372}}
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{{#set: left-end-position=57078}}
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{{#set: centisome-position=12.09295    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=11}}

Latest revision as of 11:00, 18 March 2021

Gene SJ06726

  • transcription-direction:
    • positive
  • right-end-position:
    • 121372
  • left-end-position:
    • 57078
  • centisome-position:
    • 12.09295

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7388
    • 7 reactions found over 11 reactions in the full pathway
  • PWY-6679
    • 1 reactions found over 9 reactions in the full pathway
  • PWY0-1264
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5744
    • 4 reactions found over 13 reactions in the full pathway
  • PWY-5743
    • 5 reactions found over 13 reactions in the full pathway
  • PWY-5789
    • 8 reactions found over 18 reactions in the full pathway
  • PWY-7953
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6386
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6387
    • 2 reactions found over 8 reactions in the full pathway
  • PWY-6722
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-4381
    • 3 reactions found over 3 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06726&oldid=131718"