Difference between revisions of "SJ06925"
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(Created page with "Category:gene == Gene SJ10125 == * transcription-direction: ** positive * right-end-position: ** 283367 * left-end-position: ** 276759 * centisome-position: ** 69.70083...") |
(Created page with "Category:gene == Gene SJ22245 == * transcription-direction: ** negative * right-end-position: ** 55108 * left-end-position: ** 36769 * centisome-position: ** 20.546965...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ22245 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 55108 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 36769 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 20.546965 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[2.7.1.127-RXN]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | |||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[ | + | * [[2.7.1.140-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[2.7.1.151-RXN]] |
− | ** | + | ** Category: [[annotation]] |
− | *** source: [[ | + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a |
− | * [[ | + | * [[2.7.1.152-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-10948]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-10971]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-10972]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-10974]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-13197]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | + | * [[RXN-7162]] | |
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− | * [[RXN- | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
+ | * [[RXN-7163]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | * [[RXN- | + | * [[RXN-7184]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * | + | * [[RXN-7186]] |
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** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
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</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | + | * [[PWY-6362]] | |
− | * [[PWY- | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6364]] |
− | * [[PWY- | + | ** '''2''' reactions found over '''3''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6361]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
− | ** ''' | + | * [[PWY-6372]] |
− | * [[PWY- | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
− | ** '''3''' reactions found over ''' | + | * [[PWY-6554]] |
− | * [[PWY- | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
+ | * [[PWY-6365]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6366]] | ||
+ | ** '''3''' reactions found over '''4''' reactions in the full pathway | ||
+ | * [[PWY-6369]] | ||
** '''8''' reactions found over '''9''' reactions in the full pathway | ** '''8''' reactions found over '''9''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-4661]] |
− | ** ''' | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
− | + | {{#set: transcription-direction=negative}} | |
− | + | {{#set: right-end-position=55108}} | |
− | + | {{#set: left-end-position=36769}} | |
− | + | {{#set: centisome-position=20.546965 }} | |
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− | {{#set: transcription-direction= | ||
− | {{#set: right-end-position= | ||
− | {{#set: left-end-position= | ||
− | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=13}} |
− | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=9}} |
Revision as of 14:22, 26 August 2019
Contents
Gene SJ22245
- transcription-direction:
- negative
- right-end-position:
- 55108
- left-end-position:
- 36769
- centisome-position:
- 20.546965
Organism(s) associated with this gene
Reaction(s) associated
- 2.7.1.127-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- 2.7.1.140-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 2.7.1.151-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- 2.7.1.152-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10948
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10971
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10972
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-10974
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13197
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7162
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7163
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7184
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7186
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-6362
- 5 reactions found over 5 reactions in the full pathway
- PWY-6364
- 2 reactions found over 3 reactions in the full pathway
- PWY-6361
- 5 reactions found over 5 reactions in the full pathway
- PWY-6372
- 3 reactions found over 7 reactions in the full pathway
- PWY-6554
- 5 reactions found over 5 reactions in the full pathway
- PWY-6365
- 3 reactions found over 4 reactions in the full pathway
- PWY-6366
- 3 reactions found over 4 reactions in the full pathway
- PWY-6369
- 8 reactions found over 9 reactions in the full pathway
- PWY-4661
- 3 reactions found over 7 reactions in the full pathway