Difference between revisions of "SJ06954"

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(Created page with "Category:gene == Gene SJ18979 == * transcription-direction: ** negative * right-end-position: ** 187691 * left-end-position: ** 179025 * centisome-position: ** 76.74682...")
 
(Created page with "Category:gene == Gene SJ12227 == * transcription-direction: ** negative * right-end-position: ** 733112 * left-end-position: ** 730025 * centisome-position: ** 95.44083...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ18979 ==
+
== Gene SJ12227 ==
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* right-end-position:
 
* right-end-position:
−
** 187691
+
** 733112
 
* left-end-position:
 
* left-end-position:
−
** 179025
+
** 730025
 
* centisome-position:
 
* centisome-position:
−
** 76.74682    
+
** 95.44083    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[CYSTEINE--TRNA-LIGASE-RXN]]
−
* [[4-NITROPHENYLPHOSPHATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[MYO-INOSITOL-1OR-4-MONOPHOSPHATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10949]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10952]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* [[RXN-10953]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10954]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-7253]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN0-5408]]
+
* [[RXN1G-121]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXNQT-4142]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
* [[SUGAR-PHOSPHATASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
</div>
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-2301]]
+
* [[TRNA-CHARGING-PWY]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''21''' reactions found over '''21''' reactions in the full pathway
−
* [[PWY-6363]]
+
* [[PWY1G-0]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-4702]]
 
−
** '''3''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-882]]
 
−
** '''6''' reactions found over '''8''' reactions in the full pathway
 
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: right-end-position=187691}}
+
{{#set: right-end-position=733112}}
−
{{#set: left-end-position=179025}}
+
{{#set: left-end-position=730025}}
−
{{#set: centisome-position=76.74682   }}
+
{{#set: centisome-position=95.44083   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=10}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=2}}

Revision as of 14:22, 26 August 2019

Gene SJ12227

  • transcription-direction:
    • negative
  • right-end-position:
    • 733112
  • left-end-position:
    • 730025
  • centisome-position:
    • 95.44083

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • TRNA-CHARGING-PWY
    • 21 reactions found over 21 reactions in the full pathway
  • PWY1G-0
    • 3 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ06954&oldid=19194"