Difference between revisions of "SJ07193"

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(Created page with "Category:gene == Gene SJ11643 == * transcription-direction: ** positive * right-end-position: ** 546357 * left-end-position: ** 539250 * centisome-position: ** 69.190056...")
(Created page with "Category:gene == Gene SJ07193 == * transcription-direction: ** negative * right-end-position: ** 560262 * left-end-position: ** 546247 * centisome-position: ** 37.386627...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ11643 ==
+
== Gene SJ07193 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 546357
+
** 560262
 
* left-end-position:
 
* left-end-position:
−
** 539250
+
** 546247
 
* centisome-position:
 
* centisome-position:
−
** 69.190056    
+
** 37.386627    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[1.1.1.39-RXN]]
+
* [[2.4.1.122-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[2.4.1.151-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[MALIC-NADP-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-14561]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
−
* [[OXALODECARB-RXN]]
+
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-18266]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PWY-7433]]
−
* [[PWY-7118]]
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7434]]
−
* [[GLUCONEO-PWY]]
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
** '''12''' reactions found over '''13''' reactions in the full pathway
+
* [[PWY-7290]]
−
* [[PWY-7115]]
+
** '''1''' reactions found over '''6''' reactions in the full pathway
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-7686]]
+
{{#set: right-end-position=560262}}
−
** '''1''' reactions found over '''1''' reactions in the full pathway
+
{{#set: left-end-position=546247}}
−
* [[PWY-3641]]
+
{{#set: centisome-position=37.386627   }}
−
** '''2''' reactions found over '''3''' reactions in the full pathway
 
−
* [[PWY-7384]]
 
−
** '''6''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7117]]
 
−
** '''10''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-241]]
 
−
** '''5''' reactions found over '''6''' reactions in the full pathway
 
−
* [[P184-PWY]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6339]]
 
−
** '''2''' reactions found over '''9''' reactions in the full pathway
 
−
* [[METHYLGALLATE-DEGRADATION-PWY]]
 
−
** '''2''' reactions found over '''6''' reactions in the full pathway
 
−
</div>
 
−
{{#set: transcription-direction=positive}}
 
−
{{#set: right-end-position=546357}}
 
−
{{#set: left-end-position=539250}}
 
−
{{#set: centisome-position=69.190056   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=4}}
−
{{#set: nb pathway associated=11}}
+
{{#set: nb pathway associated=3}}

Latest revision as of 11:07, 18 March 2021

Gene SJ07193

  • transcription-direction:
    • negative
  • right-end-position:
    • 560262
  • left-end-position:
    • 546247
  • centisome-position:
    • 37.386627

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7433
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7434
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7290
    • 1 reactions found over 6 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ07193&oldid=135073"