Difference between revisions of "SJ07211"

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(Created page with "Category:gene == Gene SJ11564 == * transcription-direction: ** negative * right-end-position: ** 280306 * left-end-position: ** 257951 * centisome-position: ** 69.61977...")
(Created page with "Category:gene == Gene SJ13007 == * transcription-direction: ** positive * right-end-position: ** 103789 * left-end-position: ** 98947 * centisome-position: ** 28.510466...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ11564 ==
+
== Gene SJ13007 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 280306
+
** 103789
 
* left-end-position:
 
* left-end-position:
−
** 257951
+
** 98947
 
* centisome-position:
 
* centisome-position:
−
** 69.61977    
+
** 28.510466    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[HOMOSERKIN-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2-OCTAPRENYL-6-OHPHENOL-METHY-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
* [[2.1.1.114-RXN]]
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[2.1.1.64-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[DHHB-METHYLTRANSFER-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11757]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-11758]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12160]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9225]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9229]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9233]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9237]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9240]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9280]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9281]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9282]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9287]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN3O-102]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[HOMOSER-THRESYN-PWY]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-6708]]
−
* [[PWY-702]]
+
** '''5''' reactions found over '''8''' reactions in the full pathway
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-7233]]
−
{{#set: transcription-direction=negative}}
+
** '''3''' reactions found over '''10''' reactions in the full pathway
−
{{#set: right-end-position=280306}}
+
* [[PWY-7235]]
−
{{#set: left-end-position=257951}}
+
** '''3''' reactions found over '''n.a''' reactions in the full pathway
−
{{#set: centisome-position=69.61977   }}
+
* [[PWY3O-19]]
 +
** '''4''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5856]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5871]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5870]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5855]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5873]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5857]]
 +
** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-5872]]
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7230]]
 +
** '''3''' reactions found over '''9''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=103789}}
 +
{{#set: left-end-position=98947}}
 +
{{#set: centisome-position=28.510466   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=1}}
+
{{#set: nb reaction associated=17}}
−
{{#set: nb pathway associated=2}}
+
{{#set: nb pathway associated=12}}

Revision as of 15:20, 5 January 2021

Gene SJ13007

  • transcription-direction:
    • positive
  • right-end-position:
    • 103789
  • left-end-position:
    • 98947
  • centisome-position:
    • 28.510466

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6708
    • 5 reactions found over 8 reactions in the full pathway
  • PWY-7233
    • 3 reactions found over 10 reactions in the full pathway
  • PWY-7235
    • 3 reactions found over n.a reactions in the full pathway
  • PWY3O-19
    • 4 reactions found over 8 reactions in the full pathway
  • PWY-5856
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5871
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5870
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-5855
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5873
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5857
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-5872
    • 3 reactions found over 9 reactions in the full pathway
  • PWY-7230
    • 3 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ07211&oldid=69188"