Difference between revisions of "SJ07211"
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(Created page with "Category:gene == Gene SJ00215 == * transcription-direction: ** positive * right-end-position: ** 427111 * left-end-position: ** 421276 * centisome-position: ** 73.94621...") |
(Created page with "Category:gene == Gene SJ02661 == * transcription-direction: ** positive * right-end-position: ** 32357 * left-end-position: ** 24570 * centisome-position: ** 18.752863...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ02661 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 32357 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 24570 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 18.752863 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[RXN-22198]] | ||
| + | ** Category: [[manual]] | ||
| + | *** source: [[reaction_creator_sjap]]; tool: [[unknown-tool]]; comment: curation sterols (girard et al.) | ||
| + | * [[RXN-4210]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-707]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN66-27]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | * [[RXN66-323]] |
| − | * [[ | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY- | + | * [[PWY-8238]] |
| − | ** ''' | + | ** '''6''' reactions found over '''n.a''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-2541]] |
| − | ** ''' | + | ** '''11''' reactions found over '''35''' reactions in the full pathway |
| + | * [[PWY66-4]] | ||
| + | ** '''14''' reactions found over '''4''' reactions in the full pathway | ||
| + | * [[PWY66-341]] | ||
| + | ** '''14''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[PWY66-3]] | ||
| + | ** '''12''' reactions found over '''18''' reactions in the full pathway | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
| − | {{#set: right-end-position= | + | {{#set: right-end-position=32357}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=24570}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=18.752863 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
{{#set: nb reaction associated=5}} | {{#set: nb reaction associated=5}} | ||
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Revision as of 18:47, 14 January 2021
Contents
Gene SJ02661
- transcription-direction:
- positive
- right-end-position:
- 32357
- left-end-position:
- 24570
- centisome-position:
- 18.752863
Organism(s) associated with this gene
Reaction(s) associated
- RXN-22198
- Category: manual
- source: reaction_creator_sjap; tool: unknown-tool; comment: curation sterols (girard et al.)
- Category: manual
- RXN-4210
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN-707
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN66-27
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN66-323
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-8238
- 6 reactions found over n.a reactions in the full pathway
- PWY-2541
- 11 reactions found over 35 reactions in the full pathway
- PWY66-4
- 14 reactions found over 4 reactions in the full pathway
- PWY66-341
- 14 reactions found over 18 reactions in the full pathway
- PWY66-3
- 12 reactions found over 18 reactions in the full pathway
