Difference between revisions of "SJ07241"
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(Created page with "Category:gene == Gene SJ10927 == * transcription-direction: ** positive * right-end-position: ** 24519 * left-end-position: ** 1603 * centisome-position: ** 6.4765058...") |
(Created page with "Category:gene == Gene SJ07241 == * transcription-direction: ** negative * right-end-position: ** 1235692 * left-end-position: ** 1229445 * centisome-position: ** 84.146545...") |
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[[Category:gene]] | [[Category:gene]] | ||
− | == Gene | + | == Gene SJ07241 == |
* transcription-direction: | * transcription-direction: | ||
− | ** | + | ** negative |
* right-end-position: | * right-end-position: | ||
− | ** | + | ** 1235692 |
* left-end-position: | * left-end-position: | ||
− | ** | + | ** 1229445 |
* centisome-position: | * centisome-position: | ||
− | ** | + | ** 84.146545 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | * [[ | + | * [[ACOA40OR]] |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
− | * [[ | + | * [[ACYLCOADEHYDROG-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[IVCDH]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | * [[MCDH]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[MCDH_LPAREN_2mb2coa_RPAREN_]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-12558]] | ||
+ | ** Category: [[orthology]] | ||
+ | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN-14264]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
− | * [[ | + | ** Category: [[orthology]] |
+ | *** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a | ||
+ | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
+ | * [[RXN0-2301]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
− | |||
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
− | * [[ | + | * [[FAO-PWY]] |
− | |||
− | |||
** '''6''' reactions found over '''7''' reactions in the full pathway | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
− | * [[PWY- | + | * [[PWY-6863]] |
− | ** '''9''' reactions found over ''' | + | ** '''9''' reactions found over '''11''' reactions in the full pathway |
− | * [[PWY- | + | * [[PWY-6883]] |
− | ** ''' | + | ** '''5''' reactions found over '''6''' reactions in the full pathway |
− | {{#set: transcription-direction= | + | * [[LEU-DEG2-PWY]] |
− | {{#set: right-end-position= | + | ** '''4''' reactions found over '''6''' reactions in the full pathway |
− | {{#set: left-end-position= | + | {{#set: transcription-direction=negative}} |
− | {{#set: centisome-position= | + | {{#set: right-end-position=1235692}} |
+ | {{#set: left-end-position=1229445}} | ||
+ | {{#set: centisome-position=84.146545 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
− | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=9}} |
{{#set: nb pathway associated=4}} | {{#set: nb pathway associated=4}} |
Latest revision as of 11:10, 18 March 2021
Contents
Gene SJ07241
- transcription-direction:
- negative
- right-end-position:
- 1235692
- left-end-position:
- 1229445
- centisome-position:
- 84.146545
Organism(s) associated with this gene
Reaction(s) associated
- ACOA40OR
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- ACYLCOADEHYDROG-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- IVCDH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- LONG-CHAIN-FATTY-ACYL-COA-REDUCTASE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- MCDH
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- MCDH_LPAREN_2mb2coa_RPAREN_
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-12558
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- RXN-14264
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_arabidopsis_thaliana; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- RXN0-2301
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
Pathway(s) associated
- FAO-PWY
- 6 reactions found over 7 reactions in the full pathway
- PWY-6863
- 9 reactions found over 11 reactions in the full pathway
- PWY-6883
- 5 reactions found over 6 reactions in the full pathway
- LEU-DEG2-PWY
- 4 reactions found over 6 reactions in the full pathway