Difference between revisions of "SJ07646"

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(Created page with "Category:gene == Gene SJ03336 == * transcription-direction: ** negative * right-end-position: ** 42349 * left-end-position: ** 30643 * centisome-position: ** 25.051912...")
(Created page with "Category:gene == Gene SJ07646 == * transcription-direction: ** positive * right-end-position: ** 54789 * left-end-position: ** 37504 * centisome-position: ** 58.595425...")
 
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ03336 ==
+
== Gene SJ07646 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 42349
+
** 54789
 
* left-end-position:
 
* left-end-position:
−
** 30643
+
** 37504
 
* centisome-position:
 
* centisome-position:
−
** 25.051912    
+
** 58.595425    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[DNA-DIRECTED-DNA-POLYMERASE-RXN]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[2.6.1.57-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
+
* [[2.6.1.7-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: transcription-direction=negative}}
+
* [[3-SULFINOALANINE-AMINOTRANSFERASE-RXN]]
−
{{#set: right-end-position=42349}}
+
** Category: [[orthology]]
−
{{#set: left-end-position=30643}}
+
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
−
{{#set: centisome-position=25.051912   }}
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[ASPAMINOTRANS-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[CYSTEINE-AMINOTRANSFERASE-RXN]]
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[HISTAMINOTRANS-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[PHEAMINOTRANS-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-10721]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-10814]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-11737]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-13697]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 +
* [[RXN-14147]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 +
** Category: [[orthology]]
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[PWY-6309]]
 +
** '''7''' reactions found over '''11''' reactions in the full pathway
 +
* [[CYSTEINE-DEG-PWY]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[ASPARAGINE-DEG1-PWY-1]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ASPARTATESYN-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUTDEG-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5913]]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7383]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7117]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7115]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[ASPARTATE-DEG1-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1534]]
 +
** '''1''' reactions found over '''n.a''' reactions in the full pathway
 +
* [[PWY-5329]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[HISTSYN-PWY]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7432]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5079]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[ANAPHENOXI-PWY]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PHESYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6318]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6643]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6638]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6642]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-7518]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-3581]]
 +
** '''6''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY3O-4108]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-5048]]
 +
** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[TYRFUMCAT-PWY]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7514]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5886]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[TYRSYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5754]]
 +
** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-5151]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=positive}}
 +
{{#set: right-end-position=54789}}
 +
{{#set: left-end-position=37504}}
 +
{{#set: centisome-position=58.595425   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=2}}
+
{{#set: nb reaction associated=13}}
 +
{{#set: nb pathway associated=32}}

Latest revision as of 11:07, 18 March 2021

Gene SJ07646

  • transcription-direction:
    • positive
  • right-end-position:
    • 54789
  • left-end-position:
    • 37504
  • centisome-position:
    • 58.595425

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6309
    • 7 reactions found over 11 reactions in the full pathway
  • CYSTEINE-DEG-PWY
    • 2 reactions found over 3 reactions in the full pathway
  • ASPARAGINE-DEG1-PWY-1
    • 3 reactions found over 3 reactions in the full pathway
  • ASPARTATESYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway
  • ASPARTATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • MALATE-ASPARTATE-SHUTTLE-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY0-1534
    • 1 reactions found over n.a reactions in the full pathway
  • PWY-5329
    • 2 reactions found over 2 reactions in the full pathway
  • HISTSYN-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5079
    • 2 reactions found over 4 reactions in the full pathway
  • ANAPHENOXI-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PHESYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6318
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-6643
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6638
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6642
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-3581
    • 6 reactions found over 11 reactions in the full pathway
  • PWY3O-4108
    • 2 reactions found over 4 reactions in the full pathway
  • PWY-5048
    • 1 reactions found over 10 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5754
    • 2 reactions found over 5 reactions in the full pathway
  • PWY-5151
    • 1 reactions found over 2 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ07646&oldid=134977"