Difference between revisions of "SJ07722"

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(Created page with "Category:gene == Gene SJ06446 == * transcription-direction: ** negative * right-end-position: ** 22392 * left-end-position: ** 12545 * centisome-position: ** 2.6382365...")
(Created page with "Category:gene == Gene SJ04189 == * transcription-direction: ** positive * right-end-position: ** 66160 * left-end-position: ** 24339 * centisome-position: ** 22.041405...")
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ06446 ==
+
== Gene SJ04189 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 22392
+
** 66160
 
* left-end-position:
 
* left-end-position:
−
** 12545
+
** 24339
 
* centisome-position:
 
* centisome-position:
−
** 2.6382365    
+
** 22.041405    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[PROTEIN-KINASE-RXN]]
−
* [[4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN]]
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[LTAA-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-14146]]
+
{{#set: transcription-direction=positive}}
−
** Category: [[orthology]]
+
{{#set: right-end-position=66160}}
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
{{#set: left-end-position=24339}}
−
* [[RXN-9896]]
+
{{#set: centisome-position=22.041405   }}
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
* [[THREONINE-ALDOLASE-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
** Category: [[orthology]]
 
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
−
</div>
 
−
== Pathway(s) associated ==
 
−
* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]]
 
−
** '''2''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-6100]]
 
−
** '''3''' reactions found over '''4''' reactions in the full pathway
 
−
* [[PWY-5436]]
 
−
** '''1''' reactions found over '''2''' reactions in the full pathway
 
−
* [[GLYSYN-THR-PWY]]
 
−
** '''1''' reactions found over '''1''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=22392}}
 
−
{{#set: left-end-position=12545}}
 
−
{{#set: centisome-position=2.6382365   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=5}}
+
{{#set: nb reaction associated=1}}
−
{{#set: nb pathway associated=4}}
 

Revision as of 13:05, 14 January 2021

Gene SJ04189

  • transcription-direction:
    • positive
  • right-end-position:
    • 66160
  • left-end-position:
    • 24339
  • centisome-position:
    • 22.041405

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ07722&oldid=83520"