Difference between revisions of "SJ08024"

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(Created page with "Category:metabolite == Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10280 CPD-10280] == * common-name: ** lignoceroyl-coa * smiles: ** cccccccccccccccccccccccc...")
(Created page with "Category:gene == Gene SJ08024 == * transcription-direction: ** positive * right-end-position: ** 350719 * left-end-position: ** 333962 * centisome-position: ** 74.97435...")
 
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[[Category:metabolite]]
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[[Category:gene]]
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== Metabolite [http://metacyc.org/META/NEW-IMAGE?object=CPD-10280 CPD-10280] ==
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== Gene SJ08024 ==
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* common-name:
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* transcription-direction:
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** lignoceroyl-coa
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** positive
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* smiles:
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* right-end-position:
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** cccccccccccccccccccccccc(=o)sccnc(=o)ccnc(c(o)c(c)(c)cop([o-])(=o)op([o-])(=o)occ1(c(op(=o)([o-])[o-])c(o)c(o1)n3(c=nc2(c(n)=nc=nc=23))))=o
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** 350719
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* inchi-key:
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* left-end-position:
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** moymqyzwiukggy-jbkavqfisa-j
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** 333962
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* molecular-weight:
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* centisome-position:
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** 1114.129
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** 74.97435   
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== Reaction(s) known to consume the compound ==
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== Organism(s) associated with this gene  ==
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* [[ACECOATRANS-RXN-CPD-10280/ACET//TETRACOSANOATE/ACETYL-COA.42.]]
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* [[S.japonica_carotenoid_curated]]
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* [[RXN-13296]]
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== Reaction(s) associated ==
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* [[RXN-16415-TETRACOSANOATE/ATP/CO-A//CPD-10280/AMP/PPI.43.]]
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* [[ATPASE-RXN]]
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* [[THIOESTER-RXN[CCO-CYTOSOL]-CPD-10280/WATER//TETRACOSANOATE/CO-A/PROTON.57.]]
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** Category: [[annotation]]
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== Reaction(s) known to produce the compound ==
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-13308]]
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** Category: [[orthology]]
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* [[RXN-16415-TETRACOSANOATE/ATP/CO-A//CPD-10280/AMP/PPI.43.]]
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*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
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* [[TRANS-2-ENOYL-COA-REDUCTASE-NAD+-RXN-CPD-10280/NAD//CPD-14282/NADH/PROTON.37.]]
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* [[NUCLEOSIDE-TRIPHOSPHATASE-RXN]]
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== Reaction(s) of unknown directionality ==
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** Category: [[annotation]]
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{{#set: common-name=lignoceroyl-coa}}
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: inchi-key=inchikey=moymqyzwiukggy-jbkavqfisa-j}}
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* [[RXN-12195]]
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{{#set: molecular-weight=1114.129}}
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-12196]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN0-5462]]
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** Category: [[annotation]]
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*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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* [[PWY-6545]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7210]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[PWY-7198]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-7184]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: right-end-position=350719}}
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{{#set: left-end-position=333962}}
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{{#set: centisome-position=74.97435    }}
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{{#set: organism associated=S.japonica_carotenoid_curated}}
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{{#set: nb reaction associated=5}}
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{{#set: nb pathway associated=4}}

Latest revision as of 11:04, 18 March 2021

Gene SJ08024

  • transcription-direction:
    • positive
  • right-end-position:
    • 350719
  • left-end-position:
    • 333962
  • centisome-position:
    • 74.97435

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6545
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-7210
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-7198
    • 6 reactions found over 7 reactions in the full pathway
  • PWY-7184
    • 9 reactions found over 9 reactions in the full pathway




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