Difference between revisions of "SJ08104"
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(Created page with "Category:gene == Gene SJ20503 == * transcription-direction: ** positive * right-end-position: ** 24374 * left-end-position: ** 11197 * centisome-position: ** 5.3986163...") |
(Created page with "Category:gene == Gene SJ08104 == * transcription-direction: ** positive * right-end-position: ** 10319 * left-end-position: ** 4210 * centisome-position: ** 0.94575715...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ08104 == |
* transcription-direction: | * transcription-direction: | ||
** positive | ** positive | ||
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 10319 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 4210 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 0.94575715 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[METHYLCROTONYL-COA-CARBOXYLASE-RXN]] |
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PROPIONYL-COA-CARBOXY-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | * [[ | + | * [[RXN1G-4355]] |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | == Pathway(s) associated == | ||
| + | * [[LEU-DEG2-PWY]] | ||
| + | ** '''4''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-5789]] | ||
| + | ** '''8''' reactions found over '''18''' reactions in the full pathway | ||
| + | * [[PWY-5743]] | ||
| + | ** '''5''' reactions found over '''13''' reactions in the full pathway | ||
| + | * [[PROPIONMET-PWY]] | ||
| + | ** '''1''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-6728]] | ||
| + | ** '''11''' reactions found over '''19''' reactions in the full pathway | ||
| + | * [[PWY-7384]] | ||
| + | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
| + | * [[PWYG-321]] | ||
| + | ** '''26''' reactions found over '''205''' reactions in the full pathway | ||
{{#set: transcription-direction=positive}} | {{#set: transcription-direction=positive}} | ||
| − | {{#set: right-end-position= | + | {{#set: right-end-position=10319}} |
| − | {{#set: left-end-position= | + | {{#set: left-end-position=4210}} |
| − | {{#set: centisome-position= | + | {{#set: centisome-position=0.94575715 }} |
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| + | {{#set: nb pathway associated=7}} | ||
Latest revision as of 11:01, 18 March 2021
Contents
Gene SJ08104
- transcription-direction:
- positive
- right-end-position:
- 10319
- left-end-position:
- 4210
- centisome-position:
- 0.94575715
Organism(s) associated with this gene
Reaction(s) associated
- METHYLCROTONYL-COA-CARBOXYLASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- PROPIONYL-COA-CARBOXY-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN1G-4355
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- LEU-DEG2-PWY
- 4 reactions found over 6 reactions in the full pathway
- PWY-5789
- 8 reactions found over 18 reactions in the full pathway
- PWY-5743
- 5 reactions found over 13 reactions in the full pathway
- PROPIONMET-PWY
- 1 reactions found over 3 reactions in the full pathway
- PWY-6728
- 11 reactions found over 19 reactions in the full pathway
- PWY-7384
- 6 reactions found over 10 reactions in the full pathway
- PWYG-321
- 26 reactions found over 205 reactions in the full pathway
