Difference between revisions of "SJ08123"
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(Created page with "Category:gene == Gene SJ01764 == * transcription-direction: ** negative * right-end-position: ** 37044 * left-end-position: ** 27105 * centisome-position: ** 18.56278...") |
(Created page with "Category:gene == Gene SJ08123 == * transcription-direction: ** positive * right-end-position: ** 52004 * left-end-position: ** 43180 * centisome-position: ** 9.700188...") |
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[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ08123 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 52004 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 43180 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 9.700188 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | * [[PMPOXI-RXN]] |
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | + | ** Category: [[orthology]] | |
| − | ** Category: [[ | + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a |
| − | *** source: [[ | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | + | * [[PNPOXI-RXN]] | |
| − | |||
| − | *** source: [[ | ||
| − | * [[ | ||
| − | |||
| − | |||
| − | |||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[PYRIDOXINE-4-OXIDASE-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
| − | * [[PWY | + | * [[PLPSAL-PWY]] |
| − | ** ''' | + | ** '''5''' reactions found over '''5''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7204]] |
| − | ** ''' | + | ** '''9''' reactions found over '''9''' reactions in the full pathway |
| − | * [[PWY | + | * [[PYRIDOXSYN-PWY]] |
| − | ** ''' | + | ** '''3''' reactions found over '''7''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-7282]] |
| − | ** ''' | + | ** '''6''' reactions found over '''10''' reactions in the full pathway |
| − | * [[PWY- | + | * [[PWY-5499]] |
| − | + | ** '''1''' reactions found over '''9''' reactions in the full pathway | |
| − | + | {{#set: transcription-direction=positive}} | |
| − | ** '''1''' reactions found over ''' | + | {{#set: right-end-position=52004}} |
| − | {{#set: transcription-direction= | + | {{#set: left-end-position=43180}} |
| − | {{#set: right-end-position= | + | {{#set: centisome-position=9.700188 }} |
| − | {{#set: left-end-position= | ||
| − | {{#set: centisome-position= | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=3}} |
| − | {{#set: nb pathway associated= | + | {{#set: nb pathway associated=5}} |
Latest revision as of 11:04, 18 March 2021
Contents
Gene SJ08123
- transcription-direction:
- positive
- right-end-position:
- 52004
- left-end-position:
- 43180
- centisome-position:
- 9.700188
Organism(s) associated with this gene
Reaction(s) associated
- PMPOXI-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PNPOXI-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- PYRIDOXINE-4-OXIDASE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- PLPSAL-PWY
- 5 reactions found over 5 reactions in the full pathway
- PWY-7204
- 9 reactions found over 9 reactions in the full pathway
- PYRIDOXSYN-PWY
- 3 reactions found over 7 reactions in the full pathway
- PWY-7282
- 6 reactions found over 10 reactions in the full pathway
- PWY-5499
- 1 reactions found over 9 reactions in the full pathway
