Difference between revisions of "SJ08650"
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(Created page with "Category:gene == Gene SJ14477 == * transcription-direction: ** negative * right-end-position: ** 270654 * left-end-position: ** 267373 * centisome-position: ** 85.18808...") |
(Created page with "Category:gene == Gene SJ11017 == * transcription-direction: ** positive * right-end-position: ** 1367450 * left-end-position: ** 1358538 * centisome-position: ** 94.050385...") |
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| Line 1: | Line 1: | ||
[[Category:gene]] | [[Category:gene]] | ||
| − | == Gene | + | == Gene SJ11017 == |
* transcription-direction: | * transcription-direction: | ||
| − | ** | + | ** positive |
* right-end-position: | * right-end-position: | ||
| − | ** | + | ** 1367450 |
* left-end-position: | * left-end-position: | ||
| − | ** | + | ** 1358538 |
* centisome-position: | * centisome-position: | ||
| − | ** | + | ** 94.050385 |
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
* [[S.japonica_carotenoid_curated]] | * [[S.japonica_carotenoid_curated]] | ||
== Reaction(s) associated == | == Reaction(s) associated == | ||
| − | * [[ | + | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> |
| + | * [[1.2.1.25-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[1.2.4.4-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| − | {{#set: transcription-direction= | + | ** Category: [[orthology]] |
| − | {{#set: right-end-position= | + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a |
| − | {{#set: left-end-position= | + | * [[2.3.1.168-RXN]] |
| − | {{#set: centisome-position= | + | ** Category: [[orthology]] |
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[2KETO-3METHYLVALERATE-RXN]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[KETOISOCAPROATE-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[METHYLVALERATE-RXN]] | ||
| + | ** Category: [[annotation]] | ||
| + | *** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a | ||
| + | * [[RXN-7719]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | * [[RXN-7790]] | ||
| + | ** Category: [[orthology]] | ||
| + | *** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a | ||
| + | </div> | ||
| + | == Pathway(s) associated == | ||
| + | * [[VALDEG-PWY]] | ||
| + | ** '''6''' reactions found over '''8''' reactions in the full pathway | ||
| + | * [[PWY-5046]] | ||
| + | ** '''3''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[PWY-5108]] | ||
| + | ** '''2''' reactions found over '''3''' reactions in the full pathway | ||
| + | * [[ILEUDEG-PWY]] | ||
| + | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
| + | * [[PWY-5130]] | ||
| + | ** '''2''' reactions found over '''1''' reactions in the full pathway | ||
| + | * [[PWY66-428]] | ||
| + | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
| + | {{#set: transcription-direction=positive}} | ||
| + | {{#set: right-end-position=1367450}} | ||
| + | {{#set: left-end-position=1358538}} | ||
| + | {{#set: centisome-position=94.050385 }} | ||
{{#set: organism associated=S.japonica_carotenoid_curated}} | {{#set: organism associated=S.japonica_carotenoid_curated}} | ||
| − | {{#set: nb reaction associated= | + | {{#set: nb reaction associated=8}} |
| + | {{#set: nb pathway associated=6}} | ||
Revision as of 15:20, 5 January 2021
Contents
Gene SJ11017
- transcription-direction:
- positive
- right-end-position:
- 1367450
- left-end-position:
- 1358538
- centisome-position:
- 94.050385
Organism(s) associated with this gene
Reaction(s) associated
- 1.2.1.25-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 1.2.4.4-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: annotation
- 2.3.1.168-RXN
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- 2KETO-3METHYLVALERATE-RXN
- Category: orthology
- source: output_pantograph_nannochloropsis_salina; tool: pantograph; comment: n.a
- Category: orthology
- KETOISOCAPROATE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- METHYLVALERATE-RXN
- Category: annotation
- source: saccharina_japonica_genome; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-7719
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
- RXN-7790
- Category: orthology
- source: output_pantograph_ectocarpus_siliculosus; tool: pantograph; comment: n.a
- Category: orthology
Pathway(s) associated
- VALDEG-PWY
- 6 reactions found over 8 reactions in the full pathway
- PWY-5046
- 3 reactions found over 3 reactions in the full pathway
- PWY-5108
- 2 reactions found over 3 reactions in the full pathway
- ILEUDEG-PWY
- 5 reactions found over 6 reactions in the full pathway
- PWY-5130
- 2 reactions found over 1 reactions in the full pathway
- PWY66-428
- 2 reactions found over 2 reactions in the full pathway
