Difference between revisions of "SJ08678"

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(Created page with "Category:gene == Gene SJ09771 == * transcription-direction: ** negative * right-end-position: ** 34418 * left-end-position: ** 6694 * centisome-position: ** 1.6473727...")
(Created page with "Category:gene == Gene SJ08678 == * transcription-direction: ** positive * right-end-position: ** 24938 * left-end-position: ** 14666 * centisome-position: ** 28.898521...")
 
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ09771 ==
+
== Gene SJ08678 ==
 
* transcription-direction:
 
* transcription-direction:
−
** negative
+
** positive
 
* right-end-position:
 
* right-end-position:
−
** 34418
+
** 24938
 
* left-end-position:
 
* left-end-position:
−
** 6694
+
** 14666
 
* centisome-position:
 
* centisome-position:
−
** 1.6473727    
+
** 28.898521    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
+
* [[ASPAMINOTRANS-RXN]]
−
* [[3-ISOPROPYLMALISOM-RXN]]
+
** Category: [[orthology]]
−
** Category: [[annotation]]
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PHEAMINOTRANS-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[HOMOACONITATE-HYDRATASE-RXN]]
+
* [[RXN-10814]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[IMDHT_LPAREN_3c2hmp_RPAREN_]]
+
* [[RXN-11737]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
+
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[R-2-METHYLMALATE-DEHYDRATASE-RXN]]
+
* [[RXN-13697]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13163]]
 
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-13722]]
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN-8991]]
+
* [[SUCCINYLDIAMINOPIMTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
== Pathway(s) associated ==
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
+
* [[ASPARAGINE-DEG1-PWY-1]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[ASPARTATESYN-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[GLUTDEG-PWY]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5913]]
 +
** '''10''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7383]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7117]]
 +
** '''10''' reactions found over '''14''' reactions in the full pathway
 +
* [[PWY-7115]]
 +
** '''9''' reactions found over '''11''' reactions in the full pathway
 +
* [[ASPARTATE-DEG1-PWY]]
 +
** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[MALATE-ASPARTATE-SHUTTLE-PWY]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7432]]
 +
** '''3''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5079]]
 +
** '''2''' reactions found over '''4''' reactions in the full pathway
 +
* [[ANAPHENOXI-PWY]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PHESYN]]
 +
** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6318]]
 +
** '''4''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6643]]
 +
** '''1''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-6638]]
 +
** '''1''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-6642]]
 +
** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[DAPLYSINESYN-PWY]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 
</div>
 
</div>
−
== Pathway(s) associated ==
+
{{#set: transcription-direction=positive}}
−
* [[LEUSYN-PWY]]
+
{{#set: right-end-position=24938}}
−
** '''5''' reactions found over '''6''' reactions in the full pathway
+
{{#set: left-end-position=14666}}
−
* [[PWY-6871]]
+
{{#set: centisome-position=28.898521   }}
−
** '''5''' reactions found over '''7''' reactions in the full pathway
 
−
* [[LYSINE-AMINOAD-PWY]]
 
−
** '''1''' reactions found over '''9''' reactions in the full pathway
 
−
* [[P241-PWY]]
 
−
** '''1''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-3081]]
 
−
** '''1''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-5101]]
 
−
** '''4''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-7698]]
 
−
** '''1''' reactions found over '''13''' reactions in the full pathway
 
−
{{#set: transcription-direction=negative}}
 
−
{{#set: right-end-position=34418}}
 
−
{{#set: left-end-position=6694}}
 
−
{{#set: centisome-position=1.6473727   }}
 
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=7}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=7}}
+
{{#set: nb pathway associated=18}}

Latest revision as of 11:05, 18 March 2021

Gene SJ08678

  • transcription-direction:
    • positive
  • right-end-position:
    • 24938
  • left-end-position:
    • 14666
  • centisome-position:
    • 28.898521

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • ASPARAGINE-DEG1-PWY-1
    • 3 reactions found over 3 reactions in the full pathway
  • ASPARTATESYN-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • GLUTDEG-PWY
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 8 reactions in the full pathway
  • PWY-7383
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 11 reactions in the full pathway
  • ASPARTATE-DEG1-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • MALATE-ASPARTATE-SHUTTLE-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7432
    • 3 reactions found over 2 reactions in the full pathway
  • PWY-5079
    • 2 reactions found over 4 reactions in the full pathway
  • ANAPHENOXI-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PHESYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-6318
    • 4 reactions found over 9 reactions in the full pathway
  • PWY-6643
    • 1 reactions found over 6 reactions in the full pathway
  • PWY-6638
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6642
    • 2 reactions found over 3 reactions in the full pathway
  • DAPLYSINESYN-PWY
    • 7 reactions found over 9 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ08678&oldid=133720"