Difference between revisions of "SJ08796"

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(Created page with "Category:gene == Gene SJ04962 == * transcription-direction: ** positive * right-end-position: ** 347786 * left-end-position: ** 337319 * centisome-position: ** 34.93239...")
(Created page with "Category:gene == Gene SJ04004 == * transcription-direction: ** negative * right-end-position: ** 388870 * left-end-position: ** 359555 * centisome-position: ** 69.34322...")
Line 1: Line 1:
 
[[Category:gene]]
 
[[Category:gene]]
−
== Gene SJ04962 ==
+
== Gene SJ04004 ==
 
* transcription-direction:
 
* transcription-direction:
−
** positive
+
** negative
 
* right-end-position:
 
* right-end-position:
−
** 347786
+
** 388870
 
* left-end-position:
 
* left-end-position:
−
** 337319
+
** 359555
 
* centisome-position:
 
* centisome-position:
−
** 34.93239    
+
** 69.34322    
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[S.japonica_carotenoid_curated]]
 
* [[S.japonica_carotenoid_curated]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
−
* [[RXN-12496]]
+
* [[PEPCARBOX-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN1F-150]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
−
* [[RXN1F-151]]
+
* [[PPC]]
−
** Category: [[annotation]]
 
−
*** source: [[saccharina_japonica_genome]]; tool: [[pathwaytools]]; comment: n.a
 
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
 
*** source: [[output_pantograph_nannochloropsis_salina]]; tool: [[pantograph]]; comment: n.a
−
*** source: [[output_pantograph_arabidopsis_thaliana]]; tool: [[pantograph]]; comment: n.a
 
−
*** source: [[output_pantograph_ectocarpus_siliculosus]]; tool: [[pantograph]]; comment: n.a
 
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
−
* [[PWY-7591]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
** '''1''' reactions found over '''6''' reactions in the full pathway
+
* [[PWY-241]]
−
* [[PWY-7938]]
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
* [[PWY-5913]]
−
* [[PWY-7939]]
+
** '''10''' reactions found over '''11''' reactions in the full pathway
−
** '''1''' reactions found over '''2''' reactions in the full pathway
+
* [[PWY-6142]]
−
* [[PWY-5943]]
+
** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[P23-PWY]]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWYQT-4429]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
−
{{#set: transcription-direction=positive}}
+
* [[PWY-6146]]
−
{{#set: right-end-position=347786}}
+
** '''9''' reactions found over '''2''' reactions in the full pathway
−
{{#set: left-end-position=337319}}
+
* [[FERMENTATION-PWY]]
−
{{#set: centisome-position=34.93239   }}
+
** '''11''' reactions found over '''16''' reactions in the full pathway
 +
* [[PWY-7124]]
 +
** '''8''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-6549]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-1622]]
 +
** '''6''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-7117]]
 +
** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-7115]]
 +
** '''9''' reactions found over '''10''' reactions in the full pathway
 +
</div>
 +
{{#set: transcription-direction=negative}}
 +
{{#set: right-end-position=388870}}
 +
{{#set: left-end-position=359555}}
 +
{{#set: centisome-position=69.34322   }}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
 
{{#set: organism associated=S.japonica_carotenoid_curated}}
−
{{#set: nb reaction associated=3}}
+
{{#set: nb reaction associated=2}}
−
{{#set: nb pathway associated=4}}
+
{{#set: nb pathway associated=12}}

Revision as of 11:04, 15 January 2021

Gene SJ04004

  • transcription-direction:
    • negative
  • right-end-position:
    • 388870
  • left-end-position:
    • 359555
  • centisome-position:
    • 69.34322

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-241
    • 5 reactions found over 6 reactions in the full pathway
  • PWY-5913
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • P23-PWY
    • 9 reactions found over 12 reactions in the full pathway
  • PWYQT-4429
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6146
    • 9 reactions found over 2 reactions in the full pathway
  • FERMENTATION-PWY
    • 11 reactions found over 16 reactions in the full pathway
  • PWY-7124
    • 8 reactions found over 8 reactions in the full pathway
  • PWY-6549
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-1622
    • 6 reactions found over 13 reactions in the full pathway
  • PWY-7117
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-7115
    • 9 reactions found over 10 reactions in the full pathway




Retrieved from "https://gem-aureme.genouest.org/sjapgem/index.php?title=SJ08796&oldid=106888"